BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0494600 Os09g0494600|AK107667
(266 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0494600 Protein of unknown function DUF599 family protein 380 e-106
Os08g0521000 Protein of unknown function DUF599 family protein 251 3e-67
Os08g0153900 Protein of unknown function DUF599 family protein 87 9e-18
Os08g0153800 Protein of unknown function DUF599 family protein 83 2e-16
>Os09g0494600 Protein of unknown function DUF599 family protein
Length = 266
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/266 (74%), Positives = 198/266 (74%)
Query: 1 MEWRXXXXXXXXXXXXXXVPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEK 60
MEWR VPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEK
Sbjct: 1 MEWRDSFLDLILIPLSLLVPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEK 60
Query: 61 KAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLSSTYTIKKPLSDAVFGAHGEXXXXXX 120
KAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLSSTYTIKKPLSDAVFGAHGE
Sbjct: 61 KAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLSSTYTIKKPLSDAVFGAHGEYMMALK 120
Query: 121 XXXXXXXXXXXXXXXXXXICFLNEASFLINTSPTXXXXXXXXXXXXXXXXXXXPSTRDYM 180
ICFLNEASFLINTSPT PSTRDYM
Sbjct: 121 YVALLLLFLVAFLSHSLAICFLNEASFLINTSPTLLAGGDGAGDDGGRRLLGLPSTRDYM 180
Query: 181 EEALEKGFTLNFVGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLDVVNVKSHRXXX 240
EEALEKGFTLNFVGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLDVVNVKSHR
Sbjct: 181 EEALEKGFTLNFVGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLDVVNVKSHRGGD 240
Query: 241 XXXXXXXXKSSVDKNGAAAAMDCTLV 266
KSSVDKNGAAAAMDCTLV
Sbjct: 241 CGCGCGNGKSSVDKNGAAAAMDCTLV 266
>Os08g0521000 Protein of unknown function DUF599 family protein
Length = 250
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/235 (54%), Positives = 151/235 (64%), Gaps = 8/235 (3%)
Query: 1 MEWRXXXXXXXXXXXXXXVPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAISMTKDNEK 60
M W+ P+ YHVWLW VR PL + GIN+ATRRLW + M KDNEK
Sbjct: 1 MAWKDSYLDLVLIPAGIVFPIVYHVWLWHVVRRRPLSSTVGINTATRRLWVLGMMKDNEK 60
Query: 61 KAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLSSTYTIKKPLSDAVFGAHGEXXXXXX 120
KAVLVVQS+RNVIMGSTL+ATTAILFCTG+AA+LSSTYT+KKPLSDAVFGAHGE
Sbjct: 61 KAVLVVQSMRNVIMGSTLMATTAILFCTGVAAILSSTYTVKKPLSDAVFGAHGEYMMALK 120
Query: 121 XXXXXXXXXXXXXXXXXXICFLNEASFLINTSPTXXXXXXXXXXXXXXXXXXXPSTRDYM 180
IC LN+A+FL+NT P T+DY+
Sbjct: 121 YVTLLLAFLLSFLSHTTAICTLNQATFLLNT--------LSSSSSFAADIAGLPVTKDYV 172
Query: 181 EEALEKGFTLNFVGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLDVVNVKS 235
+ LE+GF LN VGNR+F+AGVPLLLWIFGP+LA L S+VMIPIL+++DVV V
Sbjct: 173 ADVLERGFLLNLVGNRLFYAGVPLLLWIFGPVLACLCSVVMIPILHSIDVVYVDG 227
>Os08g0153900 Protein of unknown function DUF599 family protein
Length = 276
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 19 VPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAIS-MTKDNEKKAVLVVQSLRNVIMGST 77
V +AYH WL +R P T GIN+ RR+W M + + K AVL VQ++RN IM ST
Sbjct: 20 VMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASGKHAVLAVQTMRNSIMAST 79
Query: 78 LVATTAILFCTGIAAVLSS--TYTIKKP-----LSDAVFGAHGEXXXXXXXXXXXXXXXX 130
++A+ AI + +AA+++S + I P + V GA GE
Sbjct: 80 VLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVVGAGGETALSIKFFAILVCFLV 139
Query: 131 XXXXXXXXICFLNEASFLINTSPTXXXXXXXXXXXXXXXXXXXPS-TRDYMEEALEKGFT 189
I + + L+N P DY+ L +G
Sbjct: 140 AFLLNVQSIRYYSHTGILVNVP-----------LHAHRHRRRRPGLAVDYVTATLNRGSY 188
Query: 190 LNFVGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLDV 230
+G R F+ P+ LW+FGP+ F S L M+ LY LDV
Sbjct: 189 FWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLDV 229
>Os08g0153800 Protein of unknown function DUF599 family protein
Length = 235
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 19 VPMAYHVWLWRAVRLTPLRTAAGINSATRRLWAIS-MTKDNEKKAVLVVQSLRNVIMGST 77
V +AYH WL +R P T GIN+ RR+W M + + K AVL VQ++RN IM ST
Sbjct: 3 VMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEPSGKHAVLAVQTMRNSIMAST 62
Query: 78 LVATTAILFCTGIAAVLSS--TYTIKKPLSDAVFGAH--GEXXXXXXXXXXXXXXXXXXX 133
++A+ AI + +AA+++S + I AV G GE
Sbjct: 63 VLASVAITLSSLVAALMASGVAHGIFVSSGHAVVGGGVAGEAELSVKFFAILVCFLLAFL 122
Query: 134 XXXXXICFLNEASFLINTSPTXXXXXXXXXXXXXXXXXXXPS-TRDYMEEALEKGFTLNF 192
I + + L+N P DY+ L +G
Sbjct: 123 LNVQSIRYYSHTGLLVNVP-----------LHAHRHRRRRPGLAVDYVTATLNRGSYFWS 171
Query: 193 VGNRIFFAGVPLLLWIFGPLLAFLSSLVMIPILYNLDV 230
+G R F+ P+ LW+FGP+ F + L M+ LY LDV
Sbjct: 172 LGVRAFYFSCPVFLWLFGPIPMFAACLAMVCALYFLDV 209
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,671,737
Number of extensions: 150923
Number of successful extensions: 388
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 4
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)