BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0484800 Os09g0484800|AK109548
         (297 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0484800  Similar to Pirin-like protein                       545   e-155
Os03g0845000  Similar to Pirin-like protein                       363   e-101
Os08g0364900  Similar to Pirin-like protein                       278   4e-75
AK105533                                                          278   4e-75

>Os09g0484800 Similar to Pirin-like protein
          Length = 297

 Score =  545 bits (1403), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/297 (90%), Positives = 268/297 (90%)

Query: 1   MTTSMEKPRQVVRKFLARPQHEGVGAVVRRSIGRFELRYFDPFLVLDEFSVSAPAGFPDH 60
           MTTSMEKPRQVVRKFLARPQHEGVGAVVRRSIGRFELRYFDPFLVLDEFSVSAPAGFPDH
Sbjct: 1   MTTSMEKPRQVVRKFLARPQHEGVGAVVRRSIGRFELRYFDPFLVLDEFSVSAPAGFPDH 60

Query: 61  PHRGFETVTYMLEGAVTHEDFEGHRGTIKAGDVQWMTAGRGIVHSEMPAGPGTSRGLQLW 120
           PHRGFETVTYMLEGAVTHEDFEGHRGTIKAGDVQWMTAGRGIVHSEMPAGPGTSRGLQLW
Sbjct: 61  PHRGFETVTYMLEGAVTHEDFEGHRGTIKAGDVQWMTAGRGIVHSEMPAGPGTSRGLQLW 120

Query: 121 VNLSSHNKMIEPGYQEIQSKDIASTTSDGVTVRVIAGQSMGARSPVRTRTPTMYLDFTVR 180
           VNLSSHNKMIEPGYQEIQSKDIASTTSDGVTVRVIAGQSMGARSPVRTRTPTMYLDFTVR
Sbjct: 121 VNLSSHNKMIEPGYQEIQSKDIASTTSDGVTVRVIAGQSMGARSPVRTRTPTMYLDFTVR 180

Query: 181 PHAAARQPVCATWNAFAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVWNRSDKPLRF 240
           PHAAARQPVCATWNAFAY                             VEVWNRSDKPLRF
Sbjct: 181 PHAAARQPVCATWNAFAYVLEGEGVFGGGGGDKAGAHHLLLLGQGDGVEVWNRSDKPLRF 240

Query: 241 LLIAGEPIGEPVAQLGPFVMNTEEEIDMTINDFEFSINGFEKAKHWKSQALVALGLE 297
           LLIAGEPIGEPVAQLGPFVMNTEEEIDMTINDFEFSINGFEKAKHWKSQALVALGLE
Sbjct: 241 LLIAGEPIGEPVAQLGPFVMNTEEEIDMTINDFEFSINGFEKAKHWKSQALVALGLE 297



>Os03g0845000 Similar to Pirin-like protein
          Length = 361

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/287 (59%), Positives = 202/287 (70%)

Query: 4   SMEKPRQVVRKFLARPQHEGVGAVVRRSIGRFELRYFDPFLVLDEFSVSAPAGFPDHPHR 63
           + EKPR VV+K LA  Q EG GA VRRSIGR+ELR  DPFL+LDEFSVS PAGFPDHPHR
Sbjct: 75  TFEKPRTVVKKLLAESQPEGDGATVRRSIGRYELRNLDPFLMLDEFSVSKPAGFPDHPHR 134

Query: 64  GFETVTYMLEGAVTHEDFEGHRGTIKAGDVQWMTAGRGIVHSEMPAGPGTSRGLQLWVNL 123
           GFETVTYMLEGA TH+DF GH+GTI  GDVQWMTAGRGIVHSEMPA  G  +GLQLW+NL
Sbjct: 135 GFETVTYMLEGAFTHQDFAGHKGTIGTGDVQWMTAGRGIVHSEMPAADGVQKGLQLWINL 194

Query: 124 SSHNKMIEPGYQEIQSKDIASTTSDGVTVRVIAGQSMGARSPVRTRTPTMYLDFTVRPHA 183
           SS +KMIEP YQE+ SKDI+    DGV V++IAG++ G RSPV TRTPTMY+DFT++P +
Sbjct: 195 SSKDKMIEPRYQELMSKDISCAEKDGVEVKIIAGEAFGVRSPVYTRTPTMYMDFTMQPGS 254

Query: 184 AARQPVCATWNAFAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVWNRSDKPLRFLLI 243
              QP+   WNAF Y                             + VWN+S +PLRF L+
Sbjct: 255 QLHQPIPEAWNAFVYIIDGEGVFGREKASPATAHHCLVLGPGDGLSVWNKSGEPLRFALV 314

Query: 244 AGEPIGEPVAQLGPFVMNTEEEIDMTINDFEFSINGFEKAKHWKSQA 290
            G+P+ EPV Q GPFVMNT  EI   + D+ +  NGFEKA+HW S A
Sbjct: 315 GGQPLNEPVVQHGPFVMNTRAEIQQAMEDYYYGRNGFEKARHWSSTA 361



>Os08g0364900 Similar to Pirin-like protein
          Length = 352

 Score =  278 bits (710), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 139/286 (48%), Positives = 171/286 (59%)

Query: 4   SMEKPRQVVRKFLARPQHEGVGAVVRRSIGRFELRYFDPFLVLDEFSVSAPAGFPDHPHR 63
           ++ +PR V R      +  G G  VRR IGR EL   DPF+ LDEF  S PAGF DHPHR
Sbjct: 58  TVRRPRAVARTLECERRVVGEGFAVRRGIGRKELDSLDPFISLDEFEFSPPAGFHDHPHR 117

Query: 64  GFETVTYMLEGAVTHEDFEGHRGTIKAGDVQWMTAGRGIVHSEMPAGPGTSRGLQLWVNL 123
           GFE VTYMLEG  ++ DF GH+GTI  GDVQWMTAGRG+VH+EMP G G  RG+ LW+NL
Sbjct: 118 GFENVTYMLEGGFSYHDFSGHKGTINTGDVQWMTAGRGVVHAEMPGGHGVQRGINLWINL 177

Query: 124 SSHNKMIEPGYQEIQSKDIASTTSDGVTVRVIAGQSMGARSPVRTRTPTMYLDFTVRPHA 183
           SS +KM+EP YQE+ S DI +   DGV+V+VIAG+++GARSP++TRTP + LD  +RP A
Sbjct: 178 SSKDKMVEPRYQELASHDIPAAERDGVSVKVIAGEALGARSPLQTRTPALCLDVAMRPGA 237

Query: 184 AARQPVCATWNAFAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVWNRSDKPLRFLLI 243
             R PV   W+A +Y                             V          RFLL+
Sbjct: 238 RLRAPVPPGWSACSYVIDGEAVFGDEAAAAGAHTCVVFGGGGDGVAARATERSAARFLLV 297

Query: 244 AGEPIGEPVAQLGPFVMNTEEEIDMTINDFEFSINGFEKAKHWKSQ 289
           A  P GE V + GPFVMNT EE++    D+    NGFE A  W S 
Sbjct: 298 AARPHGEAVVKDGPFVMNTREEVEQAREDYRNRRNGFEMAAGWSSD 343



>AK105533 
          Length = 351

 Score =  278 bits (710), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 139/286 (48%), Positives = 171/286 (59%)

Query: 4   SMEKPRQVVRKFLARPQHEGVGAVVRRSIGRFELRYFDPFLVLDEFSVSAPAGFPDHPHR 63
           ++ +PR V R      +  G G  VRR IGR EL   DPF+ LDEF  S PAGF DHPHR
Sbjct: 57  TVRRPRAVARTLECERRVVGEGFAVRRGIGRKELDSLDPFISLDEFEFSPPAGFHDHPHR 116

Query: 64  GFETVTYMLEGAVTHEDFEGHRGTIKAGDVQWMTAGRGIVHSEMPAGPGTSRGLQLWVNL 123
           GFE VTYMLEG  ++ DF GH+GTI  GDVQWMTAGRG+VH+EMP G G  RG+ LW+NL
Sbjct: 117 GFENVTYMLEGGFSYHDFSGHKGTINTGDVQWMTAGRGVVHAEMPGGHGVQRGINLWINL 176

Query: 124 SSHNKMIEPGYQEIQSKDIASTTSDGVTVRVIAGQSMGARSPVRTRTPTMYLDFTVRPHA 183
           SS +KM+EP YQE+ S DI +   DGV+V+VIAG+++GARSP++TRTP + LD  +RP A
Sbjct: 177 SSKDKMVEPRYQELASHDIPAAERDGVSVKVIAGEALGARSPLQTRTPALCLDVAMRPGA 236

Query: 184 AARQPVCATWNAFAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVWNRSDKPLRFLLI 243
             R PV   W+A +Y                             V          RFLL+
Sbjct: 237 RLRAPVPPGWSACSYVIDGEAVFGDEAAAAGAHTCVVFGGGGDGVAARATERSAARFLLV 296

Query: 244 AGEPIGEPVAQLGPFVMNTEEEIDMTINDFEFSINGFEKAKHWKSQ 289
           A  P GE V + GPFVMNT EE++    D+    NGFE A  W S 
Sbjct: 297 AARPHGEAVVKDGPFVMNTREEVEQAREDYRNRRNGFEMAAGWSSD 342



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,712,027
Number of extensions: 392339
Number of successful extensions: 769
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 4
Length of query: 297
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 197
Effective length of database: 11,814,401
Effective search space: 2327436997
Effective search space used: 2327436997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)