Os08g0364900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pirin-like protein.
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Os08g0364900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pirin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.13 | 0.367 | 10.2 | 0.275 | 0.816 | -0.998 | 0.214 | 1.63 | 0.227 | 2.96 | 44.72 | 75 | -- | -- |
| 64.05 | 0.373 | 10.2 | 0.333 | 0.814 | -0.964 | 1.01 | -- | 0.237 | 2.93 | 41.33 | 58 | -- | -- |
| 61.16 | 0.364 | 10.2 | 0.274 | 0.816 | -1.01 | -- | 1.83 | 0.227 | 2.87 | 42.78 | 65 | -- | -- |
| 67.43 | 0.382 | 10.2 | 0.308 | 0.789 | -0.907 | -- | -- | 0.231 | 2.81 | 44.15 | 42 | -- | -- |
| 74.56 | 0.402 | 10.2 | 0.223 | -- | -0.00418 | -- | 1.77 | 0.261 | -- | 88.15 | 9 | -- | -- |
| 76.44 | 0.41 | 10.2 | 0.338 | 0.294 | -- | 0.791 | -- | 0.25 | 3.08 | -- | -- | -- | -- |
| 78.5 | 0.415 | 10.2 | 0.321 | 0.296 | -- | -- | -- | 0.245 | 2.93 | -- | -- | -- | -- |
| 82.78 | 0.424 | 10.2 | 0.313 | -- | 0.178 | -- | -- | 0.274 | -- | 92.72 | 3 | -- | -- |
| 69.91 | 0.389 | 10.2 | -- | 0.801 | -0.933 | -- | -- | 0.195 | 2.79 | 40 | 38 | -- | -- |
| 83.56 | 0.427 | 10.2 | 0.334 | -- | -- | -- | -- | 0.253 | -- | -- | -- | -- | -- |
| 81.22 | 0.422 | 10.2 | -- | 0.303 | -- | -- | -- | 0.21 | 2.94 | -- | -- | -- | -- |
| 85.36 | 0.43 | 10.2 | -- | -- | 0.207 | -- | -- | 0.245 | -- | 92.51 | 3 | -- | -- |
| 86.5 | 0.434 | 10.2 | -- | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.92 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 2 | 60.66 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 4 | 60.92 | humidity | 90 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 11 | 61.32 | humidity | 90 | 30 | < th | dose dependent | rect. | 23 | 19 |
| 12 | 61.34 | humidity | 50 | 90 | > th | dose dependent | no | NA | NA |
| 17 | 61.42 | humidity | 90 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 21 | 61.53 | humidity | 50 | 90 | > th | dose dependent | sin | 22 | NA |
| 23 | 61.55 | humidity | 50 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 26 | 61.59 | humidity | 50 | 10 | > th | dose dependent | rect. | 18 | 22 |
| 29 | 61.64 | humidity | 90 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 31 | 61.65 | humidity | 90 | 30 | < th | dose dependent | rect. | 3 | 15 |
| 36 | 61.73 | humidity | 90 | 30 | < th | dose dependent | sin | 21 | NA |
| 53 | 61.86 | humidity | 90 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 100 | 62.15 | humidity | 90 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 105 | 62.18 | humidity | 90 | 30 | < th | dose dependent | no | NA | NA |
| 107 | 62.18 | humidity | 90 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 109 | 62.19 | humidity | 90 | 30 | < th | dose dependent | rect. | 3 | 21 |
| 120 | 62.22 | humidity | 60 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 125 | 62.23 | humidity | 90 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 146 | 62.35 | humidity | 90 | 30 | < th | dose dependent | rect. | 8 | 23 |
| 153 | 62.37 | humidity | 90 | 30 | < th | dose dependent | rect. | 3 | 19 |
| 175 | 62.42 | humidity | 90 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 179 | 62.43 | humidity | 60 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 284 | 62.73 | humidity | 50 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 285 | 62.73 | humidity | 70 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 311 | 62.81 | humidity | 60 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 314 | 62.83 | humidity | 80 | 30 | > th | dose independent | rect. | 7 | 16 |
| 319 | 62.84 | humidity | 90 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 355 | 62.98 | humidity | 90 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 358 | 62.99 | humidity | 60 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 377 | 63.06 | humidity | 70 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 400 | 63.13 | humidity | 70 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 425 | 63.20 | humidity | 80 | 90 | > th | dose independent | rect. | 7 | 12 |
| 475 | 63.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 481 | 63.35 | humidity | 60 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 523 | 63.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 524 | 63.46 | humidity | 80 | 90 | > th | dose independent | rect. | 7 | 10 |
| 576 | 63.57 | humidity | 60 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 597 | 63.64 | humidity | 60 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 603 | 63.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 615 | 63.69 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 635 | 63.72 | humidity | 60 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 710 | 63.91 | humidity | 70 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 742 | 63.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 743 | 63.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 942 | 64.23 | humidity | 80 | 90 | > th | dose independent | sin | 22 | NA |
| 986 | 64.27 | humidity | 80 | 90 | < th | dose independent | sin | 22 | NA |