FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0845000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pirin-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0248) R2 : 0.368
β1 : -- (--) R2dD : -- R2D : --
β2 : 1 (0.0616) R2dC : 0.37 R2C : 0.367
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0407 (0.0521) R2dN8 : 0.00109 R2N8 : -0.00127
σ : 0.467
deviance : 99.61
__
_____
C
peak time of C : 9.04
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.12 0.444 12 -0.22 0.921 1.28 0.629 -1.85 -0.0261 9.4 50 221 -- --
89.76 0.441 12 -0.246 0.943 1.04 0.749 -- -0.00974 9.29 49.98 209 -- --
90.55 0.443 12 -0.186 0.914 1.35 -- -2.09 -0.0267 9.41 50 223 -- --
91.19 0.445 12 -0.238 0.931 0.956 -- -- -0.0219 9.39 50.05 219 -- --
135.79 0.543 12 -0.124 -- 1.54 -- -2 -0.06 -- 51.01 506 -- --
94.88 0.457 12 -0.345 1.01 -- 0.774 -- 0.00475 9 -- -- -- --
96.95 0.461 12 -0.318 1 -- -- -- 0.00536 9.01 -- -- -- --
136.33 0.544 12 -0.193 -- 0.921 -- -- -0.0589 -- 52.96 519 -- --
92.63 0.448 12 -- 0.924 1.04 -- -- 0.000472 9.44 50.19 221 -- --
154.82 0.581 12 -0.319 -- -- -- -- 0.0116 -- -- -- -- --
99.61 0.467 12 -- 1 -- -- -- 0.0407 9.04 -- -- -- --
137.29 0.546 12 -- -- 0.951 -- -- -0.0407 -- 52.93 523 -- --
157.5 0.586 12 -- -- -- -- -- 0.047 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.44 temperature 25.0 10 > th dose dependent rect. 17 14
2 85.61 temperature 25.0 90 > th dose independent rect. 16 15
17 87.30 temperature 25.0 90 > th dose dependent rect. 20 11
19 87.35 humidity 60.0 30 > th dose independent rect. 12 12
21 87.49 temperature 25.0 30 > th dose dependent sin 11 NA
22 87.52 atmosphere 1000.0 30 > th dose independent rect. 13 23
28 87.73 temperature 25.0 90 > th dose dependent rect. 17 10
31 87.77 temperature 25.0 10 > th dose dependent rect. 17 9
34 87.78 wind 9.0 4320 > th dose dependent rect. 13 1
40 87.85 temperature 25.0 90 > th dose independent rect. 16 11
43 87.93 temperature 25.0 90 > th dose independent sin 12 NA
66 88.29 humidity 60.0 30 > th dose independent rect. 10 14
68 88.30 temperature 25.0 90 > th dose independent rect. 20 11
84 88.46 atmosphere 1000.0 720 > th dose independent rect. 24 1
85 88.46 atmosphere 1000.0 30 > th dose independent rect. 24 12
88 88.49 temperature 25.0 10 > th dose independent rect. 17 8
103 88.55 temperature 25.0 4320 < th dose independent rect. 5 1
115 88.67 wind 9.0 4320 > th dose independent rect. 13 1
154 88.92 temperature 25.0 4320 > th dose independent rect. 5 1
158 88.94 wind 9.0 4320 < th dose independent rect. 13 1
159 88.94 radiation 20.0 30 > th dose independent rect. 12 23
172 89.03 humidity 50.0 720 > th dose independent rect. 1 23
175 89.06 temperature 30.0 30 < th dose independent rect. 12 12
190 89.10 temperature 25.0 720 > th dose dependent sin 13 NA
209 89.17 temperature 10.0 1440 > th dose independent rect. 13 1
213 89.17 atmosphere 995.0 1440 > th dose independent rect. 13 1
217 89.17 temperature 10.0 1440 > th dose independent rect. 14 23
226 89.19 wind 9.0 720 < th dose dependent rect. 24 1
228 89.21 wind 9.0 4320 > th dose dependent rect. 13 3
231 89.22 humidity 50.0 270 < th dose independent rect. 10 7
247 89.22 humidity 50.0 270 < th dose independent rect. 15 23
250 89.22 wind 5.0 30 < th dose dependent rect. 12 1
253 89.23 temperature 25.0 270 > th dose dependent rect. 10 1
256 89.25 humidity 50.0 270 > th dose independent no NA NA
257 89.25 humidity 50.0 270 < th dose independent sin 1 NA
260 89.25 humidity 50.0 270 < th dose dependent rect. 11 6
280 89.25 humidity 50.0 270 < th dose dependent rect. 15 23
284 89.26 radiation 40.0 30 > th dose independent rect. 12 1
291 89.27 radiation 40.0 30 > th dose dependent rect. 12 1
298 89.28 humidity 60.0 90 < th dose independent sin 10 NA
300 89.28 humidity 50.0 270 < th dose independent no NA NA
377 89.28 humidity 60.0 90 < th dose independent rect. 16 19
443 89.29 humidity 60.0 30 > th dose independent rect. 12 1
447 89.29 humidity 50.0 270 < th dose dependent sin 0 NA
472 89.30 humidity 70.0 90 < th dose dependent sin 11 NA
475 89.30 humidity 50.0 30 > th dose dependent rect. 12 1
483 89.31 atmosphere 1005.0 30 > th dose independent rect. 12 1
484 89.31 humidity 50.0 90 > th dose independent rect. 19 22
488 89.31 humidity 50.0 270 < th dose dependent no NA NA
644 89.32 humidity 60.0 90 > th dose independent sin 10 NA
645 89.32 wind 5.0 30 < th dose independent rect. 12 1
657 89.34 temperature 25.0 30 > th dose dependent rect. 12 1
662 89.35 temperature 25.0 4320 > th dose dependent rect. 22 9
671 89.36 wind 7.0 30 < th dose independent rect. 13 23
673 89.36 radiation 30.0 10 > th dose dependent rect. 12 21
674 89.37 humidity 50.0 270 > th dose independent sin 17 NA
676 89.37 temperature 15.0 30 > th dose independent rect. 13 23
698 89.39 wind 9.0 4320 > th dose independent rect. 13 3
703 89.39 radiation 10.0 30 > th dose dependent rect. 12 23
704 89.40 temperature 20.0 30 > th dose independent rect. 12 1
705 89.40 humidity 80.0 30 < th dose independent rect. 12 1
718 89.41 atmosphere 1005.0 30 > th dose dependent rect. 12 1
723 89.42 radiation 10.0 30 > th dose independent rect. 12 1
732 89.43 atmosphere 1010.0 30 < th dose independent rect. 12 1
739 89.44 temperature 10.0 30 > th dose independent rect. 12 1
741 89.44 atmosphere 995.0 30 > th dose independent rect. 12 1
744 89.44 precipitation 0.1 30 < th dose independent rect. 12 1
768 89.44 precipitation 0.1 30 < th dose dependent rect. 12 1
783 89.45 temperature 25.0 720 > th dose dependent rect. 16 1
784 89.45 atmosphere 1015.0 30 < th dose dependent rect. 12 1
787 89.46 humidity 50.0 270 > th dose independent sin 5 NA
838 89.48 wind 1.0 30 > th dose independent rect. 12 1
841 89.48 temperature 25.0 10 > th dose dependent rect. 17 4
852 89.49 temperature 30.0 10 > th dose independent rect. 12 1
867 89.50 temperature 30.0 30 < th dose independent rect. 12 1
869 89.50 humidity 50.0 270 < th dose dependent sin 10 NA
870 89.50 temperature 10.0 270 > th dose dependent rect. 14 11
907 89.52 radiation 30.0 10 > th dose dependent rect. 12 4
949 89.54 wind 5.0 270 < th dose independent rect. 13 6