Os09g0484800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pirin-like protein.
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Os09g0484800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pirin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 244.47 | 0.735 | 10.2 | -0.959 | 2.84 | -1.14 | 5 | 1.37 | -0.584 | 12.4 | 4.743 | 10 | -- | -- |
| 245.34 | 0.735 | 10.1 | -0.893 | 2.84 | -1.15 | 3.49 | -- | -0.556 | 12.5 | 5.459 | 18 | -- | -- |
| 263.56 | 0.762 | 10.1 | -0.758 | 2.94 | -1.06 | -- | -2.36 | -0.54 | 12.4 | 4.743 | 10 | -- | -- |
| 294.11 | 0.804 | 10.1 | -0.764 | 2.84 | -1.15 | -- | -- | -0.542 | 12.5 | 5.48 | 10 | -- | -- |
| 356.99 | 0.88 | 10.2 | -0.926 | -- | -3.15 | -- | -2.19 | -0.757 | -- | 6.144 | 35 | -- | -- |
| 269.98 | 0.77 | 10.1 | -0.875 | 4.15 | -- | 3.49 | -- | -0.499 | 12.2 | -- | -- | -- | -- |
| 322.74 | 0.841 | 10.1 | -0.738 | 4.14 | -- | -- | -- | -0.483 | 12.2 | -- | -- | -- | -- |
| 376.01 | 0.903 | 10.2 | -0.851 | -- | -3.21 | -- | -- | -0.703 | -- | 2.836 | 81 | -- | -- |
| 309.43 | 0.824 | 10.1 | -- | 2.87 | -1.14 | -- | -- | -0.451 | 12.5 | 5.86 | 10 | -- | -- |
| 1400.47 | 1.75 | 10.2 | -0.872 | -- | -- | -- | -- | -0.545 | -- | -- | -- | -- | -- |
| 337.11 | 0.859 | 10.1 | -- | 4.15 | -- | -- | -- | -0.401 | 12.2 | -- | -- | -- | -- |
| 394.36 | 0.925 | 10.2 | -- | -- | -3.2 | -- | -- | -0.639 | -- | 3.228 | 85 | -- | -- |
| 1420.55 | 1.76 | 10.2 | -- | -- | -- | -- | -- | -0.448 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 237.06 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 237.67 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 6 | 238.58 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 8 | 238.73 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 9 | 238.95 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 22 | 240.47 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 5 |
| 34 | 241.38 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 45 | 241.85 | humidity | 90.0 | 720 | > th | dose independent | rect. | 19 | 2 |
| 48 | 242.03 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 49 | 242.06 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 60 | 242.75 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 20 | 2 |
| 61 | 242.75 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 63 | 242.77 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 68 | 243.06 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 10 |
| 88 | 243.75 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 116 | 244.22 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 125 | 244.41 | humidity | 90.0 | 720 | > th | dose independent | rect. | 18 | 5 |
| 139 | 244.55 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 172 | 245.07 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 11 |
| 181 | 245.15 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 8 |
| 194 | 245.36 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 203 | 245.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 213 | 245.53 | humidity | 70.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 224 | 245.60 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 10 |
| 241 | 245.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 253 | 245.96 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 13 |
| 270 | 246.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 275 | 246.17 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 8 | NA |
| 276 | 246.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 278 | 246.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 279 | 246.20 | precipitation | 0.1 | 270 | < th | dose independent | sin | 8 | NA |
| 280 | 246.20 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 8 | NA |
| 287 | 246.27 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 290 | 246.29 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 294 | 246.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 295 | 246.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 296 | 246.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 299 | 246.37 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 302 | 246.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 307 | 246.45 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 311 | 246.45 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 316 | 246.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 318 | 246.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 320 | 246.51 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 323 | 246.54 | humidity | 90.0 | 720 | > th | dose independent | rect. | 16 | 7 |
| 331 | 246.61 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 333 | 246.62 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 347 | 246.73 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 389 | 246.98 | precipitation | 0.1 | 270 | > th | dose independent | sin | 7 | NA |
| 393 | 246.99 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 18 | 20 |
| 429 | 247.15 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 452 | 247.27 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 465 | 247.30 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 18 | 15 |
| 479 | 247.36 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 488 | 247.40 | radiation | 1.0 | 10 | < th | dose independent | rect. | 18 | 23 |
| 503 | 247.50 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 520 | 247.60 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 552 | 247.71 | humidity | 80.0 | 720 | > th | dose independent | sin | 16 | NA |
| 561 | 247.73 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 571 | 247.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 572 | 247.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 574 | 247.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 13 |
| 596 | 247.91 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 597 | 247.91 | humidity | 90.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 599 | 247.91 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 604 | 247.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 651 | 248.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 653 | 248.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 659 | 248.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 688 | 248.27 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 692 | 248.29 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 11 | 19 |
| 711 | 248.37 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 712 | 248.37 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 721 | 248.43 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 750 | 248.52 | radiation | 1.0 | 10 | < th | dose dependent | no | NA | NA |
| 758 | 248.52 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 759 | 248.52 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 821 | 248.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 824 | 248.76 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 826 | 248.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 836 | 248.80 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 847 | 248.84 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 861 | 248.90 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 890 | 248.98 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 894 | 248.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 928 | 249.05 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 929 | 249.06 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 4 | 7 |
| 952 | 249.08 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 970 | 249.13 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 984 | 249.18 | radiation | 20.0 | 10 | < th | dose dependent | sin | 12 | NA |