BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0484800 Os09g0484800|AK109548
(297 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50590.1 | chr1:18732378-18734053 REVERSE LENGTH=311 369 e-102
AT2G43120.1 | chr2:17927339-17928871 FORWARD LENGTH=322 342 2e-94
AT3G59220.1 | chr3:21894205-21895501 FORWARD LENGTH=288 300 7e-82
AT3G59260.1 | chr3:21903839-21905188 FORWARD LENGTH=272 276 9e-75
>AT1G50590.1 | chr1:18732378-18734053 REVERSE LENGTH=311
Length = 310
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/303 (61%), Positives = 213/303 (70%), Gaps = 9/303 (2%)
Query: 3 TSMEKPRQVVRKFLARPQHEGVGAVVRRSIGRFELRYFDPFLVLDEFSVSAPAGFPDHPH 62
+S R VV+K AR HEG GAVVRRSIGRFE RYFDPFLVLDEFSVSAPAGFPDHPH
Sbjct: 7 SSATNTRLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFLVLDEFSVSAPAGFPDHPH 66
Query: 63 RGFETVTYMLEGAVTHEDFEGHRGTIKAGDVQWMTAGRGIVHSEMPA----GPGTSRGLQ 118
RGFETVTYMLEG + HED EGH+G I+ G +QWMTAG+GIVHSEMP+ G ++GLQ
Sbjct: 67 RGFETVTYMLEGEILHEDCEGHKGVIREGGLQWMTAGKGIVHSEMPSSNSNGITHNKGLQ 126
Query: 119 LWVNLSSHNKMIEPGYQEIQSKDIASTTSDGVTVRVIAGQSMGARSPVRTRTPTMYLDFT 178
LW+NLSS K++EP YQEI+SKDIA T DGV VRVIAG+ G +S + TRTPTMYLDFT
Sbjct: 127 LWINLSSRQKLVEPSYQEIESKDIAETEKDGVRVRVIAGEWNGVKSKICTRTPTMYLDFT 186
Query: 179 VRPHAAARQPVCATWNAFAYXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXVEVWNRSD 235
+ P + QP+ WNAF Y +E WN SD
Sbjct: 187 LSPGSRISQPIPLHWNAFVYVLQGHGHFGDSKLQHSAAAAHHLLVLGLGGDMLEAWNGSD 246
Query: 236 K--PLRFLLIAGEPIGEPVAQLGPFVMNTEEEIDMTINDFEFSINGFEKAKHWKSQALVA 293
PLRF+L+AGEPIGEP+ Q GPFVMNT+EEID TI+DFE NGFEKA+HWKSQA A
Sbjct: 247 SGLPLRFILVAGEPIGEPMVQFGPFVMNTQEEIDETIDDFENFRNGFEKARHWKSQAASA 306
Query: 294 LGL 296
LGL
Sbjct: 307 LGL 309
>AT2G43120.1 | chr2:17927339-17928871 FORWARD LENGTH=322
Length = 321
Score = 342 bits (876), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 170/286 (59%), Positives = 201/286 (70%), Gaps = 6/286 (2%)
Query: 9 RQVVRKFLARPQHEGVGAVVRRSIGRFELRYFDPFLVLDEFSVSAPAGFPDHPHRGFETV 68
R V++K A+ Q EG GAVVRR I R E + DPFL+LDEFSVS PAGFPDHPHRGFETV
Sbjct: 37 RPVIKKVFAKLQKEGDGAVVRRGISRSEQKLLDPFLMLDEFSVSPPAGFPDHPHRGFETV 96
Query: 69 TYMLEGAVTHEDFEGHRGTIKAGDVQWMTAGRGIVHSEMPAGPGTSRGLQLWVNLSSHNK 128
TY+LEG +TH+DF+GH+GTI AGDVQWMTAGRGI+HSEMP ++GLQLW+NLSS+ K
Sbjct: 97 TYVLEGGITHQDFKGHKGTIYAGDVQWMTAGRGIIHSEMPE-EEVNKGLQLWINLSSNEK 155
Query: 129 MIEPGYQEIQSKDIASTTSDGVTVRVIAGQSMGARSPVRTRTPTMYLDFTVRPHAAARQP 188
MIEP YQE+ DI +GV V+VIAG+SMG +SPV TRTPTM+LDFT++P A Q
Sbjct: 156 MIEPNYQELSHSDIPKAEQNGVEVKVIAGESMGIQSPVYTRTPTMFLDFTLQPGAQIHQN 215
Query: 189 VCATWNAFAYXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXVEVWNR-SDKPLRFLLI 243
V +WNAFAY V VWN+ S K LRF+LI
Sbjct: 216 VPESWNAFAYILESGEGGGVFSSSNSSPIPAHSVVVFGPGNDGVSVWNKSSSKQLRFVLI 275
Query: 244 AGEPIGEPVAQLGPFVMNTEEEIDMTINDFEFSINGFEKAKHWKSQ 289
AGEPIGEPV Q GPFVMNT+ EIDMTI D+ + NGFE AK+W+SQ
Sbjct: 276 AGEPIGEPVVQYGPFVMNTQAEIDMTIEDYHYGKNGFEMAKYWRSQ 321
>AT3G59220.1 | chr3:21894205-21895501 FORWARD LENGTH=288
Length = 287
Score = 300 bits (768), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 150/279 (53%), Positives = 187/279 (67%), Gaps = 3/279 (1%)
Query: 8 PRQVVRKFLARPQHEGVGAVVRRSIGRFELRYFDPFLVLDEFSVSAPAGFPDHPHRGFET 67
PR V++K LA+ + EG GAVVR I + + + DPF++L EFS S AGFPDHPHRGFE+
Sbjct: 9 PRIVIKKVLAKLEKEGEGAVVRNGITKIDQKLLDPFVLLVEFSFSLSAGFPDHPHRGFES 68
Query: 68 VTYMLEGAVTHEDFEGHRGTIKAGDVQWMTAGRGIVHSEMPAGPGTSRGLQLWVNLSSHN 127
VTYML+G + H+D +GH+GTI+AGDVQWMTAGRGI+HSE P + GLQLW+NL S
Sbjct: 69 VTYMLQGGIIHKDPKGHKGTIQAGDVQWMTAGRGIIHSEFPE-EEVNNGLQLWINLPSTE 127
Query: 128 KMIEPGYQEIQSKDIASTTSDGVTVRVIAGQSMGARSPVRTRTPTMYLDFTVRPHAAARQ 187
KM EP Y+E+ S DI +GV V+VIAG SMG +SPV TRTPTM+LDFT++P + Q
Sbjct: 128 KMTEPKYKELSSLDIPRAEENGVEVKVIAGDSMGIKSPVYTRTPTMFLDFTLKPGSQTHQ 187
Query: 188 PVCATWNAFAYXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXVEVWNRS-DKPLRFLLIAG 245
V +W AFAY V VWN+S + LRFLLIAG
Sbjct: 188 TVPESWTAFAYIIEGDEGVFGSLNSSAISAHHVVVFGPGDLVSVWNKSTSRSLRFLLIAG 247
Query: 246 EPIGEPVAQLGPFVMNTEEEIDMTINDFEFSINGFEKAK 284
EPIGEPV Q GPFVMN++ EIDM +D++ + NGFE AK
Sbjct: 248 EPIGEPVVQCGPFVMNSQAEIDMAFDDYQNAKNGFEMAK 286
>AT3G59260.1 | chr3:21903839-21905188 FORWARD LENGTH=272
Length = 271
Score = 276 bits (706), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 139/263 (52%), Positives = 171/263 (65%), Gaps = 3/263 (1%)
Query: 29 RRSIGRFELRYFDPFLVLDEFSVSAPAGFPDHPHRGFETVTYMLEGAVTHEDFEGHRGTI 88
+ S + + DPF+ L EFSVS P GF DHPHRGFE+VTYM +G + H+D G++GTI
Sbjct: 10 KASPSKSDHELLDPFVSLVEFSVSPPGGFKDHPHRGFESVTYMFQGGIIHQDCNGNKGTI 69
Query: 89 KAGDVQWMTAGRGIVHSEMPAGPGTSRGLQLWVNLSSHNKMIEPGYQEIQSKDIASTTSD 148
GDVQWMTAGRGI+HSEMP ++GLQLW+NL S KMIEP EI S +I S
Sbjct: 70 HEGDVQWMTAGRGIIHSEMPE-EQVNKGLQLWINLPSSAKMIEPKNIEISSSEIPSADDY 128
Query: 149 GVTVRVIAGQSMGARSPVRTRTPTMYLDFTVRPHAAARQPVCATWNAFAYXXXXXXXX-X 207
GV V+VIAG+SMG +SP T+TP M+LDFT+ P A Q V +W AFAY
Sbjct: 129 GVEVKVIAGESMGVKSPFYTKTPIMFLDFTLDPKAQTHQAVPESWTAFAYIVEGDEGVFS 188
Query: 208 XXXXXXXXXXXXXXXXXXXXVEVWNRSD-KPLRFLLIAGEPIGEPVAQLGPFVMNTEEEI 266
V VWN S+ +PLRFLLIAGEPIGEPV Q GPFVMN+++EI
Sbjct: 189 SSDSSTVQAHNVVVFGTGDEVSVWNTSNSRPLRFLLIAGEPIGEPVVQHGPFVMNSQDEI 248
Query: 267 DMTINDFEFSINGFEKAKHWKSQ 289
+MTI D+ +NGFE AKHW+S+
Sbjct: 249 EMTIGDYRNGMNGFEMAKHWRSE 271
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,872,275
Number of extensions: 225265
Number of successful extensions: 422
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 8
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)