BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0481600 Os09g0481600|AK108636
(506 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0481600 Conserved hypothetical protein 1037 0.0
Os08g0499100 Toll-Interleukin receptor domain containing pr... 845 0.0
Os01g0760400 Disease resistance protein family protein 389 e-108
Os11g0576100 206 5e-53
>Os09g0481600 Conserved hypothetical protein
Length = 506
Score = 1037 bits (2681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/506 (100%), Positives = 506/506 (100%)
Query: 1 MVLWIGGEARYLRQNILNLSMYLGLDISAEAEKERGRIRSFEEQEHDAFQRVKRELFRDV 60
MVLWIGGEARYLRQNILNLSMYLGLDISAEAEKERGRIRSFEEQEHDAFQRVKRELFRDV
Sbjct: 1 MVLWIGGEARYLRQNILNLSMYLGLDISAEAEKERGRIRSFEEQEHDAFQRVKRELFRDV 60
Query: 61 PYLLIIDNIDNERDWWEGKDLHDFIPRNTGASHVIVTTRLPVVMNIEPMQLLQLSFPEAV 120
PYLLIIDNIDNERDWWEGKDLHDFIPRNTGASHVIVTTRLPVVMNIEPMQLLQLSFPEAV
Sbjct: 61 PYLLIIDNIDNERDWWEGKDLHDFIPRNTGASHVIVTTRLPVVMNIEPMQLLQLSFPEAV 120
Query: 121 ILMKRKMKEDYPSEEIEVLRKFDERLGGLSFGLWIVSSLLSELMIAPSTLFEAVDQISLS 180
ILMKRKMKEDYPSEEIEVLRKFDERLGGLSFGLWIVSSLLSELMIAPSTLFEAVDQISLS
Sbjct: 121 ILMKRKMKEDYPSEEIEVLRKFDERLGGLSFGLWIVSSLLSELMIAPSTLFEAVDQISLS 180
Query: 181 DTMLALGANDESLWQNNLFLIKVLVFCFALMDRVKGGSLALRMITAGSWLAPAPMSSTLL 240
DTMLALGANDESLWQNNLFLIKVLVFCFALMDRVKGGSLALRMITAGSWLAPAPMSSTLL
Sbjct: 181 DTMLALGANDESLWQNNLFLIKVLVFCFALMDRVKGGSLALRMITAGSWLAPAPMSSTLL 240
Query: 241 ATMASKLPTKANSIQLWGESLKTALLCGTHCFLAPQAKKAEVESSLLLVKLGLARRTTHH 300
ATMASKLPTKANSIQLWGESLKTALLCGTHCFLAPQAKKAEVESSLLLVKLGLARRTTHH
Sbjct: 241 ATMASKLPTKANSIQLWGESLKTALLCGTHCFLAPQAKKAEVESSLLLVKLGLARRTTHH 300
Query: 301 PGFWIQFHPIMLLFGKIRGGLAPATAAVSGVIRSRNISVYSDHMWASAFLVFGFKSEPPV 360
PGFWIQFHPIMLLFGKIRGGLAPATAAVSGVIRSRNISVYSDHMWASAFLVFGFKSEPPV
Sbjct: 301 PGFWIQFHPIMLLFGKIRGGLAPATAAVSGVIRSRNISVYSDHMWASAFLVFGFKSEPPV 360
Query: 361 VQLKPGDMVLFIKKMALPLAIQAFMTFSRCGSALELLKVCTNILEDAEKSLASRIQDLKQ 420
VQLKPGDMVLFIKKMALPLAIQAFMTFSRCGSALELLKVCTNILEDAEKSLASRIQDLKQ
Sbjct: 361 VQLKPGDMVLFIKKMALPLAIQAFMTFSRCGSALELLKVCTNILEDAEKSLASRIQDLKQ 420
Query: 421 GPLCWKKKLQTNSHADEFIWQEVTLLKATLLETRAKLLMRGGLFDSGEELCRTCISIRTV 480
GPLCWKKKLQTNSHADEFIWQEVTLLKATLLETRAKLLMRGGLFDSGEELCRTCISIRTV
Sbjct: 421 GPLCWKKKLQTNSHADEFIWQEVTLLKATLLETRAKLLMRGGLFDSGEELCRTCISIRTV 480
Query: 481 MLGHDHSQTLAAQETLAKLVRYRSKI 506
MLGHDHSQTLAAQETLAKLVRYRSKI
Sbjct: 481 MLGHDHSQTLAAQETLAKLVRYRSKI 506
>Os08g0499100 Toll-Interleukin receptor domain containing protein
Length = 986
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/506 (80%), Positives = 449/506 (88%), Gaps = 1/506 (0%)
Query: 1 MVLWIGGEARYLRQNILNLSMYLGLDISAEAEKERGRIRSFEEQEHDAFQRVKRELFRDV 60
MVLWIGGEARYLRQNILNLSM LGLDISAEAEKERGRIRSFEEQE DAFQRVKRELFRDV
Sbjct: 482 MVLWIGGEARYLRQNILNLSMNLGLDISAEAEKERGRIRSFEEQEFDAFQRVKRELFRDV 541
Query: 61 PYLLIIDNIDNERDWWEGKDLHDFIPRNTGASHVIVTTRLPVVMNIEPMQLLQLSFPEAV 120
PYLL+IDN+++ERDWWEGKDLHDFIPRNTGA+HVIVTTRLP V+N+EPMQL QLS+ +A+
Sbjct: 542 PYLLVIDNLESERDWWEGKDLHDFIPRNTGATHVIVTTRLPRVINLEPMQLPQLSYNDAM 601
Query: 121 ILMKRKMKEDYPSEEIEVLRKFDERLGGLSFGLWIVSSLLSELMIAPSTLFEAVDQISLS 180
IL+K K K DYP EE+EVLRK DERLG LSFGLWIV SLLSELMI PSTLFEAV++ISL+
Sbjct: 602 ILIKGKQKNDYPPEEMEVLRKLDERLGRLSFGLWIVGSLLSELMITPSTLFEAVERISLN 661
Query: 181 DTMLALGANDESLWQNNLFLIKVLVFCFALMDRVKGGSLALRMITAGSWLAPAPMSSTLL 240
+++ LGAND+ +NN FLIKVLVFCFALMDR KGGSL +MI AGSWLAPAP+SSTLL
Sbjct: 662 ESLFPLGANDDGFCRNNSFLIKVLVFCFALMDRAKGGSLTSKMIIAGSWLAPAPVSSTLL 721
Query: 241 ATMASKLPTKANSIQLWGESLKTALLCGTHCFLAPQAKKAEVESSLLLVKLGLARRTTHH 300
A ASKLP K S+ L GESLKTA LCGTHCFLAP +KAEVES+LLLVKLGLAR+ T H
Sbjct: 722 AATASKLPMKG-SMHLLGESLKTAFLCGTHCFLAPHGRKAEVESALLLVKLGLARKATRH 780
Query: 301 PGFWIQFHPIMLLFGKIRGGLAPATAAVSGVIRSRNISVYSDHMWASAFLVFGFKSEPPV 360
PG WIQFHPI LFGKIRGGLAP TAAV+GV+R+ N SVYSDH+WASAFLVFGFKSEPP
Sbjct: 781 PGCWIQFHPITQLFGKIRGGLAPTTAAVNGVMRAGNPSVYSDHLWASAFLVFGFKSEPPS 840
Query: 361 VQLKPGDMVLFIKKMALPLAIQAFMTFSRCGSALELLKVCTNILEDAEKSLASRIQDLKQ 420
VQLK DMV FI+K ALPLAI +FMTFSRCGSALELLKVCTN+LE+ EKS ASRIQDL +
Sbjct: 841 VQLKAVDMVHFIRKTALPLAIDSFMTFSRCGSALELLKVCTNVLEEVEKSYASRIQDLNR 900
Query: 421 GPLCWKKKLQTNSHADEFIWQEVTLLKATLLETRAKLLMRGGLFDSGEELCRTCISIRTV 480
G LCW+KKLQ N DEF+WQEVTLLKATLLETRAKLL+RGGLFD+GEELCRTCISIRTV
Sbjct: 901 GSLCWRKKLQPNHRVDEFVWQEVTLLKATLLETRAKLLLRGGLFDTGEELCRTCISIRTV 960
Query: 481 MLGHDHSQTLAAQETLAKLVRYRSKI 506
MLGH H+ TLAAQETLAKLVRYRSKI
Sbjct: 961 MLGHGHAHTLAAQETLAKLVRYRSKI 986
>Os01g0760400 Disease resistance protein family protein
Length = 1002
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/503 (40%), Positives = 321/503 (63%), Gaps = 11/503 (2%)
Query: 1 MVLWIGGEARYLRQNILNLSMYLGLDISAEAE-KERGRIRSFEEQEHDAFQRVKRELFRD 59
MVLW+ GE+RY+RQN L L +L +D+S ++ E+G R FEEQE +A ++++EL RD
Sbjct: 501 MVLWVRGESRYIRQNYLALRTFLEVDLSVDSHLHEKGSDRCFEEQEEEAIAKIRQELMRD 560
Query: 60 VPYLLIIDNIDNERDWWEGKDLHDFIPRNTGASHVIVTTRLPVVMNIEPMQLLQLSFPEA 119
+P+L+IIDN+++E+DWW+ + + D +P G +H I+TTRLP VMN+EPM+L LS EA
Sbjct: 561 IPFLVIIDNLESEKDWWDKRVITDLLPHFGGETHFIITTRLPRVMNLEPMKLSYLSGAEA 620
Query: 120 VILMKRKMKEDYPSEEIEVLRKFDERLGGLSFGLWIVSSLLSELMIAPSTLFEAVDQISL 179
+ LMK +K DYP EI+ L+ +E+LG L+ GL IV S+LSEL I PS L + + + +L
Sbjct: 621 MSLMKGGVK-DYPLVEIDALKAIEEKLGRLTLGLGIVGSILSELPITPSRLLDTLSR-TL 678
Query: 180 SDTMLALGANDESLWQNNLFLIKVLVFCFALMDRVKGG-SLALRMITAGSWLAPAPMSST 238
+ D +N+ L+++L C ++ D G SLA RM+ W AP+ +
Sbjct: 679 PIRDCSWNERDAISLKNHEILVRLLDVCLSIFDHADGPRSLATRMVQVCGWFAPSAVPIH 738
Query: 239 LLATMASKLPTKANSIQLWGESLKTALLCGTHCFLAPQAKKAEVESSLLLVKLGLARRTT 298
+LA A K+P K W + +T L CG + K++E E++ +L++ G+AR +T
Sbjct: 739 MLALAAHKVPKKHRRGPRWRKWWRT-LTCG---LATSRMKRSEAEAAAMLMRFGIARCST 794
Query: 299 HHPGFWIQFHPIMLLFGKIRGGLAPATAAVSGVIRSRNISVYSDHMWASAFLVFGFKSEP 358
++QFH ++ L+ + RGG A A V + +I S+H+WA+ F+ FGF S+P
Sbjct: 795 KPE--YVQFHDLIRLYARKRGGTRMAQAVVQSIYLRGSIKHSSEHLWAACFMFFGFGSDP 852
Query: 359 PVVQLKPGDMVLFIKKMALPLAIQAFMTFSRCGSALELLKVCTNILEDAEKSLASRIQDL 418
+V+ +P +++ F+K++ +PLAI F+T+SRC +ALELL++CT LE A S+ S
Sbjct: 853 FLVEPRPSELIFFVKQIVVPLAINTFITYSRCNAALELLRLCTEALERAADSMLSHAGKW 912
Query: 419 KQGPLCWKKKLQTNSHADEFIWQEVTLLKATLLETRAKLLMRGGLFDSGEELCRTCISIR 478
++ PL + Q+ + ++WQE+ LLKA++LETRAKL++RGG +D+G++L R I I
Sbjct: 913 RETPLSCFRPTQSEAQYT-YLWQELALLKASVLETRAKLMLRGGQYDTGDDLIRKAIFIL 971
Query: 479 TVMLGHDHSQTLAAQETLAKLVR 501
T + G H T++A+ETL+KL R
Sbjct: 972 TSICGEHHPNTVSARETLSKLTR 994
>Os11g0576100
Length = 849
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 159/529 (30%), Positives = 260/529 (49%), Gaps = 51/529 (9%)
Query: 2 VLWIGGEARYLRQNILNLSMYLGL----DISAEAEKERGRIRS--------FEEQEHDAF 49
VLW+ GEARYLR L L+ LGL D+S A +R S F E DA
Sbjct: 339 VLWVRGEARYLRMGYLKLADQLGLAVGDDLSLIAAGDRRSSGSKKAEKEWIFRGLESDAI 398
Query: 50 QRVKRELFRDVPYLLIIDNIDNERDWWEGKDLHDFIPRNTGA----SHVIV-TTRLPVVM 104
++++EL R++PYLL+IDN+++E DWW+ +D+ D +P SHVI+ TTRL +
Sbjct: 399 AKIRKELTREIPYLLVIDNLESETDWWDSRDVQDLLPGAVAGAAVRSHVIITTTRLRRLQ 458
Query: 105 NIEPMQLL-QLSFPEAVILMKRKMKEDYPSEEIEV-LRKFDERLGGLSFGLWIVSSLLSE 162
+ L + PEA++LM R + EE + LR +++G + L +V ++LSE
Sbjct: 459 RVRTFSLAPSMESPEAMLLMTRNGALAFHGEEDTIALRAIQQKVGSIPLALALVGAVLSE 518
Query: 163 LMIAPSTLFEAVDQISLSDTMLALGANDESLWQNNLFLIKVLVFCFALMDRVKG--GSLA 220
L ++P+ L +A++ ND ++N ++++L CFAL+D K G A
Sbjct: 519 LAVSPAELRQAMNDAPYRAPTWE--ENDAPALRDNPGMVQLLDVCFALLDEEKDGLGEAA 576
Query: 221 LRMITAGSWLAPAPMSSTLLATMASKLPTKA------NSIQLWGESLKTALLCGTHCFLA 274
+RM+ S+ AP+P+ LLA P + +++L S + AL +
Sbjct: 577 VRMVETSSFFAPSPIPVALLAAAMGGEPKRPLWKQMKLALRLSCSSSRRALDKDSSSRRR 636
Query: 275 PQAKKAEVESSLLLVKLGLARRTTHHPGFWIQFHPIMLLFGKIRGGLAPATAAVSGVIRS 334
A AE E+ + L++LG+ARR T P + H + LFG R + AA +R+
Sbjct: 637 AAAAAAEPEALVALLRLGIARRCTTQPAPCVSVHRVFRLFG--RKAVGSGEAAARSTVRA 694
Query: 335 RNIS-VYSDHMWASAFLVFGFKSEPPV-VQLKPGDMVLFIKKMALPLAIQAFMTFSRCGS 392
+ V+ +H WA+ V FK P + L ++ F+ +A+PLA + + S +
Sbjct: 695 ITAAEVHDEHAWAACMSV--FKIAPAIAANLPTKELPQFVTHVAVPLAARGVVAHSAYAA 752
Query: 393 ALELLKVCTNILEDAEKSLASRIQDLKQGPLCWKKKLQTNSHADEFIWQEVTLLKATLLE 452
+LL +N++ E+S L + P ++ E+ +A LL+
Sbjct: 753 VTDLLVESSNVVR-GEESRYVASGGLDENPA---------------LYHELAHSRAQLLK 796
Query: 453 TRAKLLMRGGLFDSGEELCRTCISIRTVMLGHDHSQTLAAQETLAKLVR 501
RAKL++RGG F E+ I I V+ G D +T A+ L ++++
Sbjct: 797 LRAKLMLRGGEFTLAEDHSLAVIHILEVVAGDDDPETEEARAALDRVLQ 845
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,915,957
Number of extensions: 615699
Number of successful extensions: 1578
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1566
Number of HSP's successfully gapped: 4
Length of query: 506
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 401
Effective length of database: 11,553,331
Effective search space: 4632885731
Effective search space used: 4632885731
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)