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Os01g0760400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.8 (0.0215) R2 : 0.553
β1 : 1.67 (0.0787) R2dD : 0.457 R2D : 0.395
β2 : 0.568 (0.055) R2dC : 0.105 R2C : 0.0986
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.27 (0.0459) R2dN8 : 0.0454 R2N8 : -0.0119
σ : 0.404
deviance : 74.51
__
_____
C
peak time of C : 7.78
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.42 0.368 7.83 1.58 0.638 0.568 -1.32 -0.773 0.251 3.51 0.1322 33 -- --
63.1 0.373 7.81 1.65 0.493 0.342 -1.36 -- 0.263 5.47 0.1322 33 -- --
64.25 0.373 7.82 1.6 0.636 0.617 -- -0.174 0.258 3.04 0.05 34 -- --
64.45 0.374 7.82 1.6 0.661 0.616 -- -- 0.249 3.09 0.06 34 -- --
79.83 0.418 7.82 1.65 -- 0.325 -- -0.297 0.253 -- 0.05 34 -- --
69.56 0.391 7.81 1.7 0.571 -- -1.37 -- 0.266 7.4 -- -- -- --
74.51 0.404 7.8 1.67 0.568 -- -- -- 0.27 7.78 -- -- -- --
79.89 0.418 7.82 1.66 -- 0.328 -- -- 0.281 -- 0.13 40 -- --
130.95 0.533 7.83 -- 0.743 0.702 -- -- 0.0794 2.67 0.02932 27 -- --
91.94 0.448 7.82 1.68 -- -- -- -- 0.278 -- -- -- -- --
147.85 0.569 7.85 -- 0.581 -- -- -- 0.0839 7.58 -- -- -- --
151.91 0.574 7.86 -- -- 0.362 -- -- 0.093 -- 0.02992 27 -- --
165.95 0.601 7.86 -- -- -- -- -- 0.0919 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.51 radiation 1.0 30 > th dose independent sin 12 NA
2 58.90 radiation 1.0 30 > th dose independent rect. 14 17
3 59.03 radiation 1.0 30 > th dose independent rect. 16 15
20 60.25 humidity 70.0 30 > th dose dependent rect. 5 2
21 60.26 humidity 50.0 30 > th dose independent rect. 7 22
26 60.38 radiation 1.0 10 < th dose dependent sin 12 NA
30 60.45 humidity 80.0 10 > th dose independent rect. 5 2
39 60.54 temperature 20.0 90 > th dose independent rect. 5 1
42 60.55 humidity 70.0 10 > th dose independent rect. 18 11
44 60.59 temperature 15.0 90 > th dose dependent rect. 5 1
46 60.62 wind 3.0 90 < th dose dependent rect. 5 2
48 60.65 radiation 1.0 30 < th dose dependent rect. 17 12
52 60.70 temperature 20.0 10 > th dose independent rect. 5 2
56 60.77 radiation 10.0 10 < th dose independent rect. 5 2
59 60.77 temperature 10.0 10 > th dose dependent rect. 5 2
61 60.80 radiation 1.0 30 < th dose dependent rect. 6 23
62 60.81 radiation 1.0 90 > th dose independent rect. 18 12
64 60.82 atmosphere 1015.0 30 < th dose dependent rect. 5 2
68 60.84 radiation 10.0 90 < th dose dependent rect. 7 21
70 60.85 radiation 1.0 10 < th dose dependent rect. 21 23
90 60.98 wind 3.0 10 < th dose independent rect. 5 2
95 60.99 radiation 1.0 30 < th dose dependent rect. 11 18
100 61.02 radiation 10.0 90 < th dose independent rect. 5 1
105 61.04 radiation 1.0 30 < th dose dependent rect. 13 16
110 61.09 humidity 70.0 30 > th dose independent rect. 7 22
116 61.14 radiation 1.0 10 < th dose dependent rect. 17 21
118 61.15 radiation 1.0 30 < th dose independent sin 12 NA
124 61.18 radiation 40.0 30 < th dose dependent rect. 5 2
131 61.20 wind 7.0 10 < th dose independent rect. 5 2
133 61.20 temperature 10.0 10 > th dose independent rect. 5 2
135 61.20 temperature 30.0 10 < th dose independent rect. 5 2
136 61.20 humidity 50.0 10 > th dose independent rect. 5 2
139 61.20 atmosphere 995.0 10 > th dose independent rect. 5 2
140 61.20 atmosphere 1015.0 10 < th dose independent rect. 5 2
144 61.20 precipitation 0.1 10 < th dose independent rect. 5 2
146 61.20 temperature 10.0 10 > th dose independent rect. 7 22
148 61.20 precipitation 0.1 10 < th dose dependent rect. 5 2
167 61.21 humidity 50.0 90 > th dose dependent rect. 7 21
171 61.23 atmosphere 995.0 10 > th dose independent rect. 7 22
189 61.33 radiation 1.0 10 > th dose independent rect. 5 2
205 61.36 radiation 1.0 90 < th dose independent rect. 6 22
209 61.38 atmosphere 1015.0 10 < th dose independent rect. 7 22
210 61.39 temperature 30.0 90 < th dose independent rect. 17 11
213 61.40 radiation 1.0 10 > th dose dependent rect. 16 15
225 61.46 humidity 70.0 30 > th dose independent rect. 12 17
240 61.53 radiation 1.0 90 > th dose independent rect. 5 1
242 61.53 wind 9.0 30 < th dose independent rect. 7 22
255 61.55 radiation 1.0 90 > th dose independent rect. 4 3
265 61.55 radiation 1.0 30 < th dose independent rect. 17 12
268 61.55 precipitation 0.1 10 < th dose independent rect. 7 22
270 61.55 precipitation 0.1 10 < th dose dependent rect. 7 22
308 61.65 radiation 1.0 10 < th dose dependent rect. 17 19
330 61.73 radiation 1.0 10 < th dose dependent rect. 17 15
338 61.75 radiation 1.0 90 < th dose independent rect. 11 17
490 62.02 wind 9.0 90 < th dose dependent rect. 7 21
527 62.05 radiation 1.0 10 < th dose dependent no NA NA
535 62.05 radiation 1.0 10 < th dose dependent rect. 13 23
640 62.28 temperature 30.0 10 < th dose independent rect. 18 11
657 62.34 radiation 1.0 10 > th dose dependent rect. 5 2
670 62.36 radiation 20.0 30 < th dose independent rect. 5 16
680 62.37 temperature 10.0 270 > th dose dependent rect. 12 9
699 62.40 wind 3.0 90 < th dose dependent rect. 4 7
702 62.41 radiation 40.0 10 < th dose dependent rect. 5 16
704 62.42 radiation 1.0 30 < th dose independent rect. 21 23
707 62.43 temperature 20.0 270 > th dose independent rect. 13 6
710 62.43 radiation 40.0 90 < th dose dependent rect. 4 14
758 62.51 wind 1.0 90 > th dose dependent rect. 14 7
760 62.52 humidity 70.0 270 < th dose independent rect. 13 4
765 62.52 humidity 90.0 90 > th dose dependent rect. 4 14
777 62.55 temperature 10.0 270 > th dose dependent rect. 12 7
788 62.57 wind 3.0 90 > th dose independent rect. 14 7
789 62.57 radiation 20.0 30 < th dose independent rect. 5 14
791 62.57 radiation 1.0 30 > th dose independent rect. 10 22
800 62.59 temperature 30.0 90 < th dose independent rect. 7 21
870 62.70 radiation 1.0 10 < th dose dependent rect. 1 23
921 62.80 wind 1.0 270 > th dose independent rect. 12 7
927 62.81 atmosphere 995.0 10 > th dose dependent rect. 5 2
953 62.83 humidity 50.0 10 > th dose dependent rect. 18 11
965 62.84 radiation 1.0 30 < th dose independent rect. 17 21
972 62.85 wind 1.0 270 > th dose independent rect. 13 5
990 62.86 temperature 10.0 10 > th dose dependent rect. 14 8