BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0760400 Os01g0760400|AK101847
(1002 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0760400 Disease resistance protein family protein 1957 0.0
Os08g0499100 Toll-Interleukin receptor domain containing pr... 573 e-163
Os09g0481600 Conserved hypothetical protein 389 e-108
Os11g0576100 303 4e-82
Os11g0151001 93 8e-19
>Os01g0760400 Disease resistance protein family protein
Length = 1002
Score = 1957 bits (5069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 954/1002 (95%), Positives = 954/1002 (95%)
Query: 1 MELQQESSDAGTXXXXXXXXXXXXXXXXXXXXXXXFFTPRCLSARVSDHAHPENNSSLSG 60
MELQQESSDAGT FFTPRCLSARVSDHAHPENNSSLSG
Sbjct: 1 MELQQESSDAGTLFSAPSRNLSSSSSAFVSANQSPFFTPRCLSARVSDHAHPENNSSLSG 60
Query: 61 TVLKISDILSSDTLLKREQLPSATVGLLPSDASPPPSICTSSNFDTPAIVYNNPSFISTF 120
TVLKISDILSSDTLLKREQLPSATVGLLPSDASPPPSICTSSNFDTPAIVYNNPSFISTF
Sbjct: 61 TVLKISDILSSDTLLKREQLPSATVGLLPSDASPPPSICTSSNFDTPAIVYNNPSFISTF 120
Query: 121 SDPCQGSSSATSTGVRSTQKEKHKRQWGLYRKXXXXXXXXXXXXVNRLRSFDVYIGFHGR 180
SDPCQGSSSATSTGVRSTQKEKHKRQWGLYRK VNRLRSFDVYIGFHGR
Sbjct: 121 SDPCQGSSSATSTGVRSTQKEKHKRQWGLYRKSSSSQPTTSATSVNRLRSFDVYIGFHGR 180
Query: 181 KASLLRFTNWLRAELEIHGISCFAXXXXXXXXXXXXXTIERIMNASTYGVVILTRKSFGN 240
KASLLRFTNWLRAELEIHGISCFA TIERIMNASTYGVVILTRKSFGN
Sbjct: 181 KASLLRFTNWLRAELEIHGISCFASDRSRCRSSHSHDTIERIMNASTYGVVILTRKSFGN 240
Query: 241 PYTIEELRNFFGKKNLIPIFFDLGAADCLARDIIEKRGELWERHGGELWMLYGGMEQEWR 300
PYTIEELRNFFGKKNLIPIFFDLGAADCLARDIIEKRGELWERHGGELWMLYGGMEQEWR
Sbjct: 241 PYTIEELRNFFGKKNLIPIFFDLGAADCLARDIIEKRGELWERHGGELWMLYGGMEQEWR 300
Query: 301 ESVDALSRVSDVQLEANDGNWRHCILQTIIVLATKLGRRSVVDRVNRWRGRVEKEEFPFP 360
ESVDALSRVSDVQLEANDGNWRHCILQTIIVLATKLGRRSVVDRVNRWRGRVEKEEFPFP
Sbjct: 301 ESVDALSRVSDVQLEANDGNWRHCILQTIIVLATKLGRRSVVDRVNRWRGRVEKEEFPFP 360
Query: 361 RNADFVGRKKELSELELILFGDVSGDGEREYFEIKTKQRRKGLVIGRSVNNYEQVNTDDG 420
RNADFVGRKKELSELELILFGDVSGDGEREYFEIKTKQRRKGLVIGRSVNNYEQVNTDDG
Sbjct: 361 RNADFVGRKKELSELELILFGDVSGDGEREYFEIKTKQRRKGLVIGRSVNNYEQVNTDDG 420
Query: 421 KGKEPVLWKETKENIEMQRLGSPPRHGRPSRTKNDGRYGRKRRCRKILYGKGIACISGES 480
KGKEPVLWKETKENIEMQRLGSPPRHGRPSRTKNDGRYGRKRRCRKILYGKGIACISGES
Sbjct: 421 KGKEPVLWKETKENIEMQRLGSPPRHGRPSRTKNDGRYGRKRRCRKILYGKGIACISGES 480
Query: 481 GIGKTDLVLEYAYRFSQRYKMVLWVRGESRYIRQNYLALRTFLEVDLSVDSHLHEKGSDR 540
GIGKTDLVLEYAYRFSQRYKMVLWVRGESRYIRQNYLALRTFLEVDLSVDSHLHEKGSDR
Sbjct: 481 GIGKTDLVLEYAYRFSQRYKMVLWVRGESRYIRQNYLALRTFLEVDLSVDSHLHEKGSDR 540
Query: 541 CFEEQEEEAIAKIRQELMRDIPFLVIIDNLESEKDWWDKRVITDLLPHFGGETHFIITTR 600
CFEEQEEEAIAKIRQELMRDIPFLVIIDNLESEKDWWDKRVITDLLPHFGGETHFIITTR
Sbjct: 541 CFEEQEEEAIAKIRQELMRDIPFLVIIDNLESEKDWWDKRVITDLLPHFGGETHFIITTR 600
Query: 601 LPRVMNLEPMKLSYLSGAEAMSLMKGGVKDYPLVEIDALKAIEEKLGRLTLGLGIVGSIL 660
LPRVMNLEPMKLSYLSGAEAMSLMKGGVKDYPLVEIDALKAIEEKLGRLTLGLGIVGSIL
Sbjct: 601 LPRVMNLEPMKLSYLSGAEAMSLMKGGVKDYPLVEIDALKAIEEKLGRLTLGLGIVGSIL 660
Query: 661 SELPITPSRLLDTLSRTLPIRDCSWNERDAISLKNHEILVRLLDVCLSIFDHADGPRSLA 720
SELPITPSRLLDTLSRTLPIRDCSWNERDAISLKNHEILVRLLDVCLSIFDHADGPRSLA
Sbjct: 661 SELPITPSRLLDTLSRTLPIRDCSWNERDAISLKNHEILVRLLDVCLSIFDHADGPRSLA 720
Query: 721 TRMVQVCGWFAPSAVPIHMLALAAHKVPKKHRRGPRWRKWWRTLTCGLATSRMKRSEAEA 780
TRMVQVCGWFAPSAVPIHMLALAAHKVPKKHRRGPRWRKWWRTLTCGLATSRMKRSEAEA
Sbjct: 721 TRMVQVCGWFAPSAVPIHMLALAAHKVPKKHRRGPRWRKWWRTLTCGLATSRMKRSEAEA 780
Query: 781 AAMLMRFGIARCSTKPEYVQFHDLIRLYARKRGGTRMAQAVVQSIYLRGSIKHSSEHLWA 840
AAMLMRFGIARCSTKPEYVQFHDLIRLYARKRGGTRMAQAVVQSIYLRGSIKHSSEHLWA
Sbjct: 781 AAMLMRFGIARCSTKPEYVQFHDLIRLYARKRGGTRMAQAVVQSIYLRGSIKHSSEHLWA 840
Query: 841 ACFMFFGFGSDPFLVEPRPSELIFFVKQIVVPLAINTFITYSRCNAALELLRLCTEALER 900
ACFMFFGFGSDPFLVEPRPSELIFFVKQIVVPLAINTFITYSRCNAALELLRLCTEALER
Sbjct: 841 ACFMFFGFGSDPFLVEPRPSELIFFVKQIVVPLAINTFITYSRCNAALELLRLCTEALER 900
Query: 901 AADSMLSHAGKWRETPLSCFRPTQSEAQYTYLWQELALLKASVLETRAKLMLRGGQYDTG 960
AADSMLSHAGKWRETPLSCFRPTQSEAQYTYLWQELALLKASVLETRAKLMLRGGQYDTG
Sbjct: 901 AADSMLSHAGKWRETPLSCFRPTQSEAQYTYLWQELALLKASVLETRAKLMLRGGQYDTG 960
Query: 961 DDLIRKAIFILTSICGEHHPNTVSARETLSKLTRLLTNVQLS 1002
DDLIRKAIFILTSICGEHHPNTVSARETLSKLTRLLTNVQLS
Sbjct: 961 DDLIRKAIFILTSICGEHHPNTVSARETLSKLTRLLTNVQLS 1002
>Os08g0499100 Toll-Interleukin receptor domain containing protein
Length = 986
Score = 573 bits (1478), Expect = e-163, Method: Compositional matrix adjust.
Identities = 335/860 (38%), Positives = 499/860 (58%), Gaps = 67/860 (7%)
Query: 167 RLRSFDVYIGFHGRKASLLRFTNWLRAELEIHGISCFAXXXXXXXXXXXXXTIERIMNAS 226
+LRS DVYIG+HG SL RF WL++ELE+ GI+ F +RI+ +
Sbjct: 167 KLRSCDVYIGYHG-NGSLGRFCKWLKSELELQGIASFVADRAKYSDTQSHEIADRIICSV 225
Query: 227 TYGVVILTRKSFGNPYTIEELRNFFGKKNLIPIFFDLGAADCLARDIIEKRGELWERHGG 286
+GV+++T SF NP+++EE+R F KKNL+PI FD
Sbjct: 226 AFGVIVVTMSSFLNPFSLEEIRFFAQKKNLVPILFDTEPP-------------------- 265
Query: 287 ELWMLYGGM--EQEWRESVDALSRVSDVQLEANDGNWRHCILQTIIVLATKLGRRSVVDR 344
E+ L+ G ++E +E+ + L R + +LEAN+ NWR C+ +T+ +L +KLGR+S+ ++
Sbjct: 266 EIAGLFDGKLEDKEGKEAFEGLMRCHEFKLEANETNWRSCVSKTVTLLRSKLGRKSIAEK 325
Query: 345 VNRWRGRVEKEEFPFPRNADFVGRKKELSELELILFGDVSGDGEREYFE-IKTKQRRKGL 403
+ E PFPRN FVGR+KELSE+E + FG E + R G+
Sbjct: 326 ESEG-----PEGMPFPRNRHFVGREKELSEIEGMFFGSTVDIQEVDCPRGSAANDRSSGV 380
Query: 404 VIGRSVNNYEQVNTDDG--------KGKEPVLWKETKENIEMQRLGSPPRHGRPSRTKND 455
G + + V T + K KEP L IE+ GR + K
Sbjct: 381 SDGFADEESDTVRTSNARYISLEMRKCKEPTLEAWIDPVIELSS-----GKGR-NLQKQR 434
Query: 456 GRYGRKR-RCRKILYGKG-IACISGESGIGKTDLVLEYAYRFSQRYKMVLWVRGESRYIR 513
++ R R RC YG + CI+G SGIGKT+L LE+AYR+SQRYKMVLW+ GE+RY+R
Sbjct: 435 SKHRRSRFRCNSKGYGSASVLCITGSSGIGKTELALEFAYRYSQRYKMVLWIGGEARYLR 494
Query: 514 QNYLALRTFLEVDLSVDSHLHEKGSDRCFEEQEEEAIAKIRQELMRDIPFLVIIDNLESE 573
QN L L L +D+S ++ E+G R FEEQE +A ++++EL RD+P+L++IDNLESE
Sbjct: 495 QNILNLSMNLGLDISAEAE-KERGRIRSFEEQEFDAFQRVKRELFRDVPYLLVIDNLESE 553
Query: 574 KDWWDKRVITDLLPHFGGETHFIITTRLPRVMNLEPMKLSYLSGAEAMSLMKGGVK-DYP 632
+DWW+ + + D +P G TH I+TTRLPRV+NLEPM+L LS +AM L+KG K DYP
Sbjct: 554 RDWWEGKDLHDFIPRNTGATHVIVTTRLPRVINLEPMQLPQLSYNDAMILIKGKQKNDYP 613
Query: 633 LVEIDALKAIEEKLGRLTLGLGIVGSILSELPITPSRLLDTLSRTLPIRDCSWNE----- 687
E++ L+ ++E+LGRL+ GL IVGS+LSEL ITPS L + + R S NE
Sbjct: 614 PEEMEVLRKLDERLGRLSFGLWIVGSLLSELMITPSTLFEAVERI------SLNESLFPL 667
Query: 688 --RDAISLKNHEILVRLLDVCLSIFDHADGPRSLATRMVQVCGWFAPSAVPIHMLALAAH 745
D +N+ L+++L C ++ D A G SL ++M+ W AP+ V +LA A
Sbjct: 668 GANDDGFCRNNSFLIKVLVFCFALMDRAKG-GSLTSKMIIAGSWLAPAPVSSTLLAATAS 726
Query: 746 KVPKK---HRRGPRWRKWWRTLTCGLATSRMKRSEAEAAAMLMRFGIARCSTKPE--YVQ 800
K+P K H G + + T +++E E+A +L++ G+AR +T+ ++Q
Sbjct: 727 KLPMKGSMHLLGESLKTAFLCGTHCFLAPHGRKAEVESALLLVKLGLARKATRHPGCWIQ 786
Query: 801 FHDLIRLYARKRGGTRMAQAVVQSIYLRGSIKHSSEHLWAACFMFFGFGSDPFLVEPRPS 860
FH + +L+ + RGG A V + G+ S+HLWA+ F+ FGF S+P V+ +
Sbjct: 787 FHPITQLFGKIRGGLAPTTAAVNGVMRAGNPSVYSDHLWASAFLVFGFKSEPPSVQLKAV 846
Query: 861 ELIFFVKQIVVPLAINTFITYSRCNAALELLRLCTEALERAADSMLSHAGKWRETPLSCF 920
+++ F+++ +PLAI++F+T+SRC +ALELL++CT LE S S L
Sbjct: 847 DMVHFIRKTALPLAIDSFMTFSRCGSALELLKVCTNVLEEVEKSYASRIQDLNRGSLCWR 906
Query: 921 RPTQSEAQYT-YLWQELALLKASVLETRAKLMLRGGQYDTGDDLIRKAIFILTSICGEHH 979
+ Q + ++WQE+ LLKA++LETRAKL+LRGG +DTG++L R I I T + G H
Sbjct: 907 KKLQPNHRVDEFVWQEVTLLKATLLETRAKLLLRGGLFDTGEELCRTCISIRTVMLGHGH 966
Query: 980 PNTVSARETLSKLTRLLTNV 999
+T++A+ETL+KL R + +
Sbjct: 967 AHTLAAQETLAKLVRYRSKI 986
>Os09g0481600 Conserved hypothetical protein
Length = 506
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/503 (40%), Positives = 321/503 (63%), Gaps = 11/503 (2%)
Query: 501 MVLWVRGESRYIRQNYLALRTFLEVDLSVDSHLHEKGSDRCFEEQEEEAIAKIRQELMRD 560
MVLW+ GE+RY+RQN L L +L +D+S ++ E+G R FEEQE +A ++++EL RD
Sbjct: 1 MVLWIGGEARYLRQNILNLSMYLGLDISAEAE-KERGRIRSFEEQEHDAFQRVKRELFRD 59
Query: 561 IPFLVIIDNLESEKDWWDKRVITDLLPHFGGETHFIITTRLPRVMNLEPMKLSYLSGAEA 620
+P+L+IIDN+++E+DWW+ + + D +P G +H I+TTRLP VMN+EPM+L LS EA
Sbjct: 60 VPYLLIIDNIDNERDWWEGKDLHDFIPRNTGASHVIVTTRLPVVMNIEPMQLLQLSFPEA 119
Query: 621 MSLMKGGVK-DYPLVEIDALKAIEEKLGRLTLGLGIVGSILSELPITPSRLLDTLSR-TL 678
+ LMK +K DYP EI+ L+ +E+LG L+ GL IV S+LSEL I PS L + + + +L
Sbjct: 120 VILMKRKMKEDYPSEEIEVLRKFDERLGGLSFGLWIVSSLLSELMIAPSTLFEAVDQISL 179
Query: 679 PIRDCSWNERDAISLKNHEILVRLLDVCLSIFDHADGPRSLATRMVQVCGWFAPSAVPIH 738
+ D +N+ L+++L C ++ D G SLA RM+ W AP+ +
Sbjct: 180 SDTMLALGANDESLWQNNLFLIKVLVFCFALMDRVKGG-SLALRMITAGSWLAPAPMSST 238
Query: 739 MLALAAHKVPKKHRRGPRWRKWWRT-LTCG---LATSRMKRSEAEAAAMLMRFGIARCST 794
+LA A K+P K W + +T L CG + K++E E++ +L++ G+AR +T
Sbjct: 239 LLATMASKLPTKANSIQLWGESLKTALLCGTHCFLAPQAKKAEVESSLLLVKLGLARRTT 298
Query: 795 KPE--YVQFHDLIRLYARKRGGTRMAQAVVQSIYLRGSIKHSSEHLWAACFMFFGFGSDP 852
++QFH ++ L+ + RGG A A V + +I S+H+WA+ F+ FGF S+P
Sbjct: 299 HHPGFWIQFHPIMLLFGKIRGGLAPATAAVSGVIRSRNISVYSDHMWASAFLVFGFKSEP 358
Query: 853 FLVEPRPSELIFFVKQIVVPLAINTFITYSRCNAALELLRLCTEALERAADSMLSHAGKW 912
+V+ +P +++ F+K++ +PLAI F+T+SRC +ALELL++CT LE A S+ S
Sbjct: 359 PVVQLKPGDMVLFIKKMALPLAIQAFMTFSRCGSALELLKVCTNILEDAEKSLASRIQDL 418
Query: 913 RETPLSCFRPTQSEAQYT-YLWQELALLKASVLETRAKLMLRGGQYDTGDDLIRKAIFIL 971
++ PL + Q+ + ++WQE+ LLKA++LETRAKL++RGG +D+G++L R I I
Sbjct: 419 KQGPLCWKKKLQTNSHADEFIWQEVTLLKATLLETRAKLLMRGGLFDSGEELCRTCISIR 478
Query: 972 TSICGEHHPNTVSARETLSKLTR 994
T + G H T++A+ETL+KL R
Sbjct: 479 TVMLGHDHSQTLAAQETLAKLVR 501
>Os11g0576100
Length = 849
Score = 303 bits (777), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 208/569 (36%), Positives = 297/569 (52%), Gaps = 60/569 (10%)
Query: 464 CRKILYGKGIACISGESGIGKTDLVLEYAYRFSQRYKMVLWVRGESRYIRQNYLALRTFL 523
C + + G+ CISG SG GKT+LVLEYA+R + YK VLWVRGE+RY+R YL L L
Sbjct: 301 CGEPAFMDGVVCISGASGAGKTELVLEYAHRHAMEYKKVLWVRGEARYLRMGYLKLADQL 360
Query: 524 EVDLSVDSHLHEKGSDRC-----------FEEQEEEAIAKIRQELMRDIPFLVIIDNLES 572
+ + D L G R F E +AIAKIR+EL R+IP+L++IDNLES
Sbjct: 361 GLAVGDDLSLIAAGDRRSSGSKKAEKEWIFRGLESDAIAKIRKELTREIPYLLVIDNLES 420
Query: 573 EKDWWDKRVITDLLP-HFGG---ETHFII-TTRLPRVMNLEPMKLS-YLSGAEAMSLM-- 624
E DWWD R + DLLP G +H II TTRL R+ + L+ + EAM LM
Sbjct: 421 ETDWWDSRDVQDLLPGAVAGAAVRSHVIITTTRLRRLQRVRTFSLAPSMESPEAMLLMTR 480
Query: 625 KGGVKDYPLVEIDALKAIEEKLGRLTLGLGIVGSILSELPITPSRLLDTLSRTLPIRDCS 684
G + + + AL+AI++K+G + L L +VG++LSEL ++P+ L ++ P R +
Sbjct: 481 NGALAFHGEEDTIALRAIQQKVGSIPLALALVGAVLSELAVSPAELRQAMNDA-PYRAPT 539
Query: 685 WNERDAISLKNHEILVRLLDVCLSIFD-HADGPRSLATRMVQVCGWFAPSAVPIHMLALA 743
W E DA +L+++ +V+LLDVC ++ D DG A RMV+ +FAPS +P+ +LA A
Sbjct: 540 WEENDAPALRDNPGMVQLLDVCFALLDEEKDGLGEAAVRMVETSSFFAPSPIPVALLAAA 599
Query: 744 AHKVPKKHRRGPRWRKWWRTLTCGLATSR--------------MKRSEAEAAAMLMRFGI 789
PK+ P W++ L ++SR +E EA L+R GI
Sbjct: 600 MGGEPKR----PLWKQMKLALRLSCSSSRRALDKDSSSRRRAAAAAAEPEALVALLRLGI 655
Query: 790 A-RCSTKPE-YVQFHDLIRLYARKRGGTRMAQAVVQSIYLRGSIKHSSEHLWAACFMFFG 847
A RC+T+P V H + RL+ RK G+ A A + + H EH WAAC F
Sbjct: 656 ARRCTTQPAPCVSVHRVFRLFGRKAVGSGEAAARSTVRAITAAEVH-DEHAWAACMSVFK 714
Query: 848 FGSDPFLVEPRPS-ELIFFVKQIVVPLAINTFITYSRCNAALELLRLCTEALERAADSML 906
P + P+ EL FV + VPLA + +S A +LL + + R +S
Sbjct: 715 IA--PAIAANLPTKELPQFVTHVAVPLAARGVVAHSAYAAVTDLLVESSNVV-RGEESRY 771
Query: 907 SHAGKWRETPLSCFRPTQSEAQYTYLWQELALLKASVLETRAKLMLRGGQYDTGDDLIRK 966
+G E P L+ ELA +A +L+ RAKLMLRGG++ +D
Sbjct: 772 VASGGLDENP--------------ALYHELAHSRAQLLKLRAKLMLRGGEFTLAEDHSLA 817
Query: 967 AIFILTSICGEHHPNTVSARETLSKLTRL 995
I IL + G+ P T AR L ++ ++
Sbjct: 818 VIHILEVVAGDDDPETEEARAALDRVLQV 846
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 117/197 (59%), Gaps = 2/197 (1%)
Query: 186 RFTNWLRAELEIHGISCFAXXXXXXXXXXXXXTIERIMNASTYGVVILTRKSFGNPYTIE 245
RF WL AE+E G+ C A M+A GVV++T S GNPY ++
Sbjct: 93 RFVAWLCAEMEALGVRCVAADRRRCRDAPSHAAARAAMDAVVAGVVVVTPASLGNPYCVD 152
Query: 246 ELRNFFGKKNLIPIFFDLGAADCLARDIIEKRGELWERHGGELWMLYGGMEQEWRESVDA 305
E+R F K L+P+F LG DC A D++EKRG+LW R GG LW +Y G E++WRE+V A
Sbjct: 153 EIRAFVEKGRLVPVFVGLGKGDCRAEDVVEKRGDLWGRFGGHLWKVYDGGERDWREAVGA 212
Query: 306 LSRVSDVQLEANDGNWRHCILQTIIVLATKLGRRSVVDRVNRWRGRVE-KEEFPFPRNAD 364
LSR +D +E + + RH ++ + ++ ++LGRR+V D V WR E PF RN
Sbjct: 213 LSR-ADPAVEVDAASQRHRLIDLLEIVGSRLGRRAVTDAVRSWRAAAAVHPELPFARNER 271
Query: 365 FVGRKKELSELELILFG 381
FVGR+ EL +LE +LFG
Sbjct: 272 FVGRESELLDLEAVLFG 288
>Os11g0151001
Length = 177
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 10/129 (7%)
Query: 254 KNLIPIFFDLGAADCLARDIIEKRGELWERHGGELWMLYGGMEQEWRESVDALSRVSDVQ 313
++ +P+F LG DC A DI R GG LW +Y G + +WRE+V ALSR ++
Sbjct: 30 RDQMPLFVGLGKGDCRAEDI--------RRFGGHLWKVYDGGKWDWREAVGALSR-AESA 80
Query: 314 LEANDGNWRHCILQTIIVLATKLGRRSVVDRVNRWRGRVE-KEEFPFPRNADFVGRKKEL 372
+E + + RH ++ + ++ ++LGR +V D V W V + E PF RN FVGR+ EL
Sbjct: 81 VEVDAASQRHRLIDLLKIVESRLGRHAVADAVRSWHAAVAVRPELPFTRNEGFVGRESEL 140
Query: 373 SELELILFG 381
+LE LFG
Sbjct: 141 LDLEADLFG 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 33,412,091
Number of extensions: 1426986
Number of successful extensions: 3875
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3847
Number of HSP's successfully gapped: 6
Length of query: 1002
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 891
Effective length of database: 11,240,047
Effective search space: 10014881877
Effective search space used: 10014881877
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 161 (66.6 bits)