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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0499100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Toll-Interleukin receptor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.91 (0.0408) R2 : 0.49
β1 : -2.16 (0.15) R2dD : 0.231 R2D : 0.0895
β2 : 1.1 (0.107) R2dC : 0.133 R2C : -0.0312
β3 : -1.18 (0.0949) R2dE : 0.192 R2E : 0.027
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.975 (0.0872) R2dN8 : 0.185 R2N8 : 0.0774
σ : 0.764
deviance : 268.99
__
_____
C
peak time of C : 2.52
E
wheather : radiation
threshold : 30.01
memory length : 47
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.15
open length of G : 21.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.72 0.744 3.93 -2.13 1.17 -1.21 0.696 1.63 -0.998 2.36 25.99 60 6.08 21.4
257.75 0.748 3.92 -2.06 1.13 -1.29 1.84 -- -0.968 1.64 27.72 47 6.19 21.4
251.91 0.739 3.93 -2.13 1.19 -1.2 -- 1.91 -0.989 2.44 24.77 60 6.05 21.4
268.99 0.764 3.91 -2.16 1.1 -1.18 -- -- -0.975 2.52 30.01 47 6.15 21.4
286.44 0.788 3.91 -2.12 -- -1.52 -- 1.75 -0.887 -- 101.7 47 5.93 21.5
307.16 0.822 3.9 -1.99 1.18 -- -0.772 -- -0.994 6.29 -- -- -- --
308.18 0.822 3.9 -2 1.18 -- -- -- -0.993 6.02 -- -- -- --
287.38 0.79 3.9 -2.06 -- -1.45 -- -- -0.877 -- 130.6 47 5.99 21.5
386.07 0.915 3.88 -- 0.997 -0.98 -- -- -0.868 3.05 40 51 6.25 21.3
380.57 0.912 3.92 -1.96 -- -- -- -- -0.966 -- -- -- -- --
413.52 0.951 3.85 -- 1.15 -- -- -- -0.77 6.1 -- -- -- --
399.29 0.931 3.85 -- -- -1.34 -- -- -0.652 -- 121.3 47 6 21.4
482.4 1.03 3.87 -- -- -- -- -- -0.748 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 254.86 radiation 20.0 90 < th dose dependent rect. 6 21
4 255.80 temperature 20.0 270 > th dose dependent rect. 21 12
10 257.12 temperature 30.0 720 < th dose dependent rect. 20 9
12 257.24 radiation 10.0 90 < th dose independent rect. 6 21
15 257.58 temperature 20.0 720 > th dose dependent rect. 16 15
17 257.86 temperature 20.0 720 > th dose dependent sin 12 NA
20 258.06 temperature 20.0 720 > th dose dependent rect. 20 7
41 259.06 temperature 25.0 270 < th dose independent rect. 22 13
57 259.42 temperature 10.0 30 > th dose dependent rect. 6 21
89 260.98 temperature 10.0 720 > th dose dependent rect. 19 8
97 261.08 temperature 30.0 270 < th dose dependent rect. 22 12
109 261.53 radiation 40.0 43200 < th dose independent rect. 16 15
120 261.82 temperature 30.0 720 < th dose dependent rect. 3 2
133 262.13 humidity 80.0 90 > th dose dependent rect. 3 3
142 262.52 temperature 30.0 720 < th dose dependent sin 11 NA
156 263.01 humidity 80.0 90 > th dose independent rect. 3 3
189 263.66 temperature 30.0 270 < th dose dependent sin 8 NA
194 263.86 temperature 20.0 270 > th dose dependent rect. 5 4
209 264.22 temperature 25.0 270 < th dose independent sin 8 NA
224 264.50 temperature 20.0 10 > th dose dependent rect. 6 6
238 264.77 temperature 25.0 720 < th dose independent rect. 17 17
242 264.83 temperature 20.0 720 < th dose independent rect. 22 8
302 265.63 wind 5.0 30 < th dose dependent rect. 3 3
314 265.78 wind 1.0 90 > th dose independent rect. 6 21
374 266.61 humidity 90.0 90 > th dose dependent rect. 23 7
384 266.77 humidity 90.0 90 > th dose dependent sin 7 NA
402 266.92 temperature 10.0 270 > th dose dependent sin 10 NA
407 266.97 radiation 40.0 90 < th dose dependent rect. 15 12
433 267.22 humidity 90.0 90 > th dose dependent rect. 21 9
454 267.49 temperature 10.0 720 > th dose dependent sin 13 NA
464 267.57 temperature 20.0 270 > th dose independent rect. 5 4
475 267.63 temperature 30.0 270 < th dose dependent rect. 22 15
477 267.66 temperature 20.0 720 < th dose independent rect. 1 5
489 267.74 radiation 40.0 270 < th dose independent rect. 13 12
491 267.76 wind 3.0 10 < th dose independent rect. 3 3
496 267.79 humidity 70.0 1440 > th dose independent rect. 4 3
504 267.85 radiation 20.0 270 < th dose independent rect. 13 21
513 267.96 wind 1.0 30 > th dose independent sin 5 NA
521 268.01 atmosphere 1015.0 30 < th dose independent rect. 6 21
539 268.16 temperature 10.0 90 > th dose dependent rect. 3 3
541 268.17 radiation 20.0 90 < th dose dependent rect. 3 3
548 268.24 temperature 15.0 90 > th dose independent rect. 6 21
554 268.28 temperature 20.0 720 < th dose independent rect. 3 3
560 268.33 wind 7.0 90 < th dose independent rect. 3 3
573 268.41 temperature 10.0 90 > th dose independent rect. 3 3
575 268.41 temperature 30.0 90 < th dose independent rect. 3 3
576 268.41 humidity 50.0 90 > th dose independent rect. 3 3
579 268.41 atmosphere 995.0 90 > th dose independent rect. 3 3
580 268.41 atmosphere 1010.0 90 < th dose independent rect. 3 3
582 268.41 radiation 20.0 90 < th dose independent rect. 3 3
597 268.48 wind 3.0 30 < th dose dependent sin 7 NA
612 268.59 humidity 90.0 90 > th dose dependent rect. 2 23
623 268.68 humidity 90.0 30 > th dose dependent rect. 3 21
634 268.71 humidity 50.0 30 > th dose dependent rect. 18 12
710 269.08 wind 9.0 90 < th dose independent rect. 6 21
722 269.16 radiation 30.0 270 < th dose dependent rect. 13 21
723 269.16 humidity 90.0 90 > th dose dependent rect. 8 22
750 269.35 radiation 20.0 90 < th dose independent rect. 15 12
792 269.50 radiation 30.0 14400 > th dose dependent rect. 7 1
811 269.53 humidity 60.0 14400 > th dose independent rect. 4 3
818 269.56 temperature 25.0 720 < th dose independent sin 11 NA
824 269.59 humidity 90.0 90 > th dose dependent rect. 23 11
855 269.79 precipitation 0.1 10 < th dose independent rect. 6 21
856 269.79 humidity 90.0 90 > th dose dependent rect. 3 7
859 269.79 precipitation 0.1 10 < th dose dependent rect. 6 21
892 269.97 humidity 90.0 30 > th dose independent rect. 3 9
901 270.01 precipitation 0.1 90 < th dose independent rect. 3 3
904 270.01 precipitation 0.1 90 < th dose dependent rect. 3 3
912 270.03 temperature 10.0 720 > th dose dependent rect. 6 1
915 270.05 humidity 90.0 30 > th dose independent sin 5 NA
919 270.06 humidity 90.0 90 > th dose dependent rect. 21 13
921 270.07 humidity 90.0 30 > th dose independent rect. 3 7
981 270.28 temperature 10.0 10 > th dose dependent sin 8 NA