BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0499100 Os08g0499100|J090081M14
(986 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G56220.1 | chr5:22754871-22757792 FORWARD LENGTH=974 1097 0.0
AT4G23440.1 | chr4:12237765-12240659 FORWARD LENGTH=965 634 0.0
>AT5G56220.1 | chr5:22754871-22757792 FORWARD LENGTH=974
Length = 973
Score = 1097 bits (2838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/938 (59%), Positives = 689/938 (73%), Gaps = 40/938 (4%)
Query: 62 AFVSALQSPYISPRVLEXXXXXXXXXXXXXXXXXXXXXSYSNSEDTDAPSASRTPPSERY 121
AFVSALQSPYISPR SY S+ D PS+S TPPS++Y
Sbjct: 63 AFVSALQSPYISPRA---------TTPSITTHKPSPPLSYKGSQSDDVPSSSYTPPSDQY 113
Query: 122 DSGGIDPATK-----VSDCGGGVQPRVSFSFPVPRVSFTRGSVASPSSNAKLRSCDVYIG 176
+ P+ + S PR+SFSFPVPRVS + SV+SP++N KLRS DV+IG
Sbjct: 114 EFSDEQPSDRKLKLSASCTPDPAPPRISFSFPVPRVSLAKVSVSSPATNTKLRSSDVFIG 173
Query: 177 YHG-NGSLGRFCKWLKSELELQGIASFVADRAKYSDTQSHEIADRIICSVAFGVIVVTMS 235
+HG N +L RFCKWLKSELELQGIA FVADRAKYSDTQSHEIADR+ICSV +G++VV+ S
Sbjct: 174 FHGQNPNLVRFCKWLKSELELQGIACFVADRAKYSDTQSHEIADRVICSVTYGIVVVSCS 233
Query: 236 SFLNPFSLEEIRFFAQKKNLVPILFDTEPPEIAGLFDGKLEDKEGKEAFEGLMRCHEFKL 295
S LN SLEE+RFFAQKKNL+PI + T P EI GL + DKE KEA +GL++ HEFKL
Sbjct: 234 SLLNYLSLEEVRFFAQKKNLIPIFYGTGPSEIMGLLNCNAIDKECKEAIDGLIKSHEFKL 293
Query: 296 EANETNWRSCVSKTVTLLRSKLGRKSIAEKE-SEGPEGMPFPRNRHFVGREKELSEIEGM 354
EANE+NWRSCV KT T+LR+KLGRKS+A+KE EG + +PFPRNR F+GREKE+ E+E
Sbjct: 294 EANESNWRSCVGKTATILRAKLGRKSVADKEIVEGIDELPFPRNRSFLGREKEIIEMEMA 353
Query: 355 FFGSTVDIQEVD-CPRGSAANDRSSGVSDGFADEESDTVRTSNARYISLEMRKCKEPTLE 413
FG+ ++ RG A SG S+G ADEESD V T N ++ISLE+ +C + E
Sbjct: 354 LFGNGEYLESTTPSTRGEA-----SGQSEGLADEESDVVPTRNGKFISLELGRCSDSRSE 408
Query: 414 AWIDPVIELSSGKGRNLQKQRSKHRRSRFRCNSKGYGSASVLCITGSSGIGKTELALEFA 473
AW DP G+N K+ K ++ R N K S SV+C+ G GIGKTELALEFA
Sbjct: 409 AWSDP------NGGKNSLKRLLKTKKCRNNSNCKS--STSVVCVNGVPGIGKTELALEFA 460
Query: 474 YRYSQRYKMVLWIGGEARYLRQNILNLSMNLGLDISAEAEKERGRIRSFEEQEFDAFQRV 533
YRYSQRYKMVLW+GGEARY RQN+LNLS +LGLD+SA+AEK+RGR+RSF+EQEF+AF+R+
Sbjct: 461 YRYSQRYKMVLWVGGEARYFRQNLLNLSFSLGLDVSADAEKDRGRLRSFDEQEFEAFKRI 520
Query: 534 KRELFRDVPYLLVIDNLESERDWWEGKDLHDFIPRNTGATHVIVTTRLPRVINLEPMQLP 593
KRELFRD+PYLL+IDNLE E+DWWEGKDL+D IPRNTG THV++TTRLP+V+ + +QL
Sbjct: 521 KRELFRDMPYLLIIDNLEIEKDWWEGKDLNDLIPRNTGGTHVLITTRLPKVMTFDTVQLS 580
Query: 594 QLSYNDAMILIKGKQKNDYPPEEMEVLRKLDERLGRLSFGLWIVGSLLSELMITPSTLFE 653
L +DAM+L++G++K DYP EE+EVL+ DE+LGRLS+GLW+VGSLLSEL I PS LFE
Sbjct: 581 ILPSSDAMVLLRGRRKKDYPVEEVEVLKLFDEKLGRLSYGLWVVGSLLSELAILPSALFE 640
Query: 654 AVERISLNE-SLFP-LGANDDGFCRNNSFLIKVLVFCFALMDRAKGGS--LTSKMIIAGS 709
AV ++ + E S P L ND+ +C++N F+ KVL F A++++A+G L+ KM++ G+
Sbjct: 641 AVNKVQIEERSASPFLNLNDEQYCKSNPFVAKVLAFSLAVLEQAEGNRNLLSLKMLLVGA 700
Query: 710 WLAPAPVSSTLLAATASKLPMKGS-MHLLGESLKTAFLCGTHCFLAPHGRKAEVESALLL 768
W AP P+ LLAA A +P G+ + L F C L GR++E ++A LL
Sbjct: 701 WFAPVPIPVNLLAAAAKNMPTGGNRFSKWNKCLSHTFAWCGGCGL---GRRSEEDAAFLL 757
Query: 769 VKLGLARKATRHPGCWIQFHPITQLFGKIRGGLAPTTAAVNGVMRAGNPSVYSDHLWASA 828
V+LGLAR R PGCWIQFHPITQ F + R + A V GV + NP + DHLWASA
Sbjct: 758 VRLGLARLTNRQPGCWIQFHPITQTFARRRDYILAPKATVQGVRKIDNPLLNLDHLWASA 817
Query: 829 FLVFGFKSEPPSVQLKAVDMVHFIRKTALPLAIDSFMTFSRCGSALELLKVCTNVLEEVE 888
FLVFGFKSEPP VQL+A+DMV +I++TALPLAI +F TFSRC SALELLKVCTNVLEEVE
Sbjct: 818 FLVFGFKSEPPLVQLQAMDMVLYIKRTALPLAITAFTTFSRCNSALELLKVCTNVLEEVE 877
Query: 889 KSYASRIQDLNRGSLCWRKKLQPNHRVDEFVWQEVTLLKATLLETRAKLLLRGGLFDTGE 948
KS+ S+IQD +GSLCW+KK N +VDE+VWQ+VTLLKA LLETRAKLLLRGG FD+GE
Sbjct: 878 KSFVSQIQDWRQGSLCWKKKT--NKKVDEYVWQDVTLLKALLLETRAKLLLRGGHFDSGE 935
Query: 949 ELCRTCISIRTVMLGHGHAHTLAAQETLAKLVRYRSKI 986
ELCRTCISIRTVMLGH H TLAAQETLAKLVR RSKI
Sbjct: 936 ELCRTCISIRTVMLGHNHDLTLAAQETLAKLVRMRSKI 973
>AT4G23440.1 | chr4:12237765-12240659 FORWARD LENGTH=965
Length = 964
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/864 (40%), Positives = 528/864 (61%), Gaps = 52/864 (6%)
Query: 153 SFTRGSVASPSSNAKLRSCDVYIGYHGNG-SLGRFCKWLKSELELQGIASFVADRAKYSD 211
S+T+ S S S N +LR CDV+IG +G SL RF WL++ELE QG++ F++DR +
Sbjct: 115 SYTQTSSVSVSYN-RLRCCDVFIGLYGQKPSLLRFADWLRAELEFQGMSCFMSDRGRCRS 173
Query: 212 TQSHEIADRIICSVAFGVIVVTMSSFLNPFSLEEIRFFAQKKNLVPILFDTEPPE----- 266
++ I +R + +FGVI++T +F NP+++EE+RFFA KKNLVP+ FD P E
Sbjct: 174 SRKQRIVERAMDGASFGVIILTRKAFKNPYTIEELRFFANKKNLVPVFFDLSPGECLVRD 233
Query: 267 ---------------IAGLFDGKLEDKEGKEAFEGLMRCHEFKLEANETNWRSCVSKTVT 311
+ L+ G +KE KEA GL R ++KLEA+E NWR CV + VT
Sbjct: 234 IVEKRGDLWEKHGGELWVLYGGI--EKEWKEAVHGLSRVDDWKLEAHEGNWRDCVFRAVT 291
Query: 312 LLRSKLGRKSIAEK-----ESEGPEGMPFPRNRHFVGREKELSEIEGMFFGSTVDIQEVD 366
LL +LGR+SI E+ + E P+PRN FVGR+KELSE+E + FG E D
Sbjct: 292 LLAMRLGRRSIVERLTKWRDKAEKEEFPYPRNESFVGRKKELSELEFVLFGDVAGDSERD 351
Query: 367 CPRGSA-ANDRSSGVSDGFADEESDTVRTSNARYISLEMRKCKEPTLEAWIDPVIELSSG 425
A R V+ G+ S R +K KE + + IE+ S
Sbjct: 352 YFELKARPTRRKKNVTLGWNKSGSAEERR----------KKGKEKVVWKESEKEIEMQST 401
Query: 426 KGRNLQKQRSKHRRSRFRCNSKGYGSASVLCITGSSGIGKTELALEFAYRYSQRYKMVLW 485
+ + + + R R YG V C++G SGIGKTEL LEFAYR+ QRYKMVLW
Sbjct: 402 EMPSRSQVKVGRNTRRKRSMKVVYGKG-VACVSGESGIGKTELLLEFAYRHHQRYKMVLW 460
Query: 486 IGGEARYLRQNILNLSMNLGLDISAEAEKERGRIRSFEEQEFDAFQRVKRELFRDVPYLL 545
IGGE+RY+RQN LNL L +DI E ++ R++SFEEQE A ++++EL R++P+L+
Sbjct: 461 IGGESRYIRQNYLNLYQYLEVDIGIENSSDKTRMKSFEEQEDAAVSKIRKELMRNIPFLV 520
Query: 546 VIDNLESERDWWEGKDLHDFIPRNTGATHVIVTTRLPRVINLEPMQLPQLSYNDAMILIK 605
VIDNLESE+DWW+ K + D +PR G TH++++TRL +V+N+EP++L LS +AM L++
Sbjct: 521 VIDNLESEKDWWDSKLVMDLLPRFGGGTHILISTRLSQVMNMEPLKLSYLSGAEAMSLMQ 580
Query: 606 GKQKNDYPPEEMEVLRKLDERLGRLSFGLWIVGSLLSELMITPSTLFEAVERISLNESLF 665
G K DYP EM+ LR ++++LGRL+ GL +VG++LSEL I PS L + + R+ L E +
Sbjct: 581 GNVK-DYPVSEMDALRTIEDKLGRLTLGLAVVGAILSELPINPSRLLDTINRMPLREMV- 638
Query: 666 PLGANDDGFCRNNSFLIKVLVFCFALMDRAKG-GSLTSKMIIAGSWLAPAPVSSTLLAAT 724
+ R N+FL+++ CF++ D A G SL ++M++A WLAPAPV ++LLA
Sbjct: 639 -CSGREGNLLRRNAFLLQLFEVCFSIFDHADGPRSLATRMVVASGWLAPAPVPASLLALA 697
Query: 725 ASKLPMKG-SMHLLGESLKTAFLCGTHCFLAPHGRKAEVESALLLVKLGLARKATRHPGC 783
A KLP K L L+ A CG F + + +++ E+A +L++ +AR ++ G
Sbjct: 698 AHKLPEKHRGPKRLWRRLRRAITCG---FTSSNSKRSGAEAASMLLRFNIARTSSIKLG- 753
Query: 784 WIQFHPITQLFGKIRGGLAPTT-AAVNGVMRAGNPSVYSDHLWASAFLVFGFKSEPPSVQ 842
+IQ H + +L+ + R + A V V+ G+ ++ +WA FL+FGF +E P++Q
Sbjct: 754 FIQIHELVKLYARNRVLVNENAPAMVQAVISRGSTVETAEQIWAVCFLLFGFSNESPTIQ 813
Query: 843 LKAVDMVHFIRKTALPLAIDSFMTFSRCGSALELLKVCTNVLEEVEKSYASRIQDLNRGS 902
LK +++ +++ LPLAI +F++FSRC +++ELL+VCTN LE +++ + ++ S
Sbjct: 814 LKITELLILVKQVILPLAIRTFISFSRCTASVELLRVCTNALEAADQTLVTPVEKWLDKS 873
Query: 903 LCWRKKLQPNHRVDEFVWQEVTLLKATLLETRAKLLLRGGLFDTGEELCRTCISIRTVML 962
LCWR +Q + +++ +W+E+ L +AT+LETRAKL+LRGG F ++L R I IRT +
Sbjct: 874 LCWR-PVQTSAQLNPILWEELALARATVLETRAKLMLRGGQFGLADDLIRKAIFIRTSIS 932
Query: 963 GHGHAHTLAAQETLAKLVRYRSKI 986
G H T++A+ETL+KL R S +
Sbjct: 933 GEDHPGTVSARETLSKLTRLLSNV 956
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,867,536
Number of extensions: 888486
Number of successful extensions: 2375
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2356
Number of HSP's successfully gapped: 2
Length of query: 986
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 878
Effective length of database: 8,145,641
Effective search space: 7151872798
Effective search space used: 7151872798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)