BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0499100 Os08g0499100|J090081M14
(986 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0499100 Toll-Interleukin receptor domain containing pr... 1935 0.0
Os09g0481600 Conserved hypothetical protein 845 0.0
Os01g0760400 Disease resistance protein family protein 591 e-169
Os11g0576100 269 9e-72
>Os08g0499100 Toll-Interleukin receptor domain containing protein
Length = 986
Score = 1935 bits (5013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 947/986 (96%), Positives = 947/986 (96%)
Query: 1 MEEEKEAGSFLDVPKDIPIAATKSLTIRTNGGFXXXXXXXXXXXPAISITPHLYXXXXXX 60
MEEEKEAGSFLDVPKDIPIAATKSLTIRTNGGF PAISITPHLY
Sbjct: 1 MEEEKEAGSFLDVPKDIPIAATKSLTIRTNGGFSSSSDRSNPISPAISITPHLYSPSPPS 60
Query: 61 XAFVSALQSPYISPRVLEXXXXXXXXXXXXXXXXXXXXXSYSNSEDTDAPSASRTPPSER 120
AFVSALQSPYISPRVLE SYSNSEDTDAPSASRTPPSER
Sbjct: 61 SAFVSALQSPYISPRVLEPPTPAAAPPPPQEAAAPSPPASYSNSEDTDAPSASRTPPSER 120
Query: 121 YDSGGIDPATKVSDCGGGVQPRVSFSFPVPRVSFTRGSVASPSSNAKLRSCDVYIGYHGN 180
YDSGGIDPATKVSDCGGGVQPRVSFSFPVPRVSFTRGSVASPSSNAKLRSCDVYIGYHGN
Sbjct: 121 YDSGGIDPATKVSDCGGGVQPRVSFSFPVPRVSFTRGSVASPSSNAKLRSCDVYIGYHGN 180
Query: 181 GSLGRFCKWLKSELELQGIASFVADRAKYSDTQSHEIADRIICSVAFGVIVVTMSSFLNP 240
GSLGRFCKWLKSELELQGIASFVADRAKYSDTQSHEIADRIICSVAFGVIVVTMSSFLNP
Sbjct: 181 GSLGRFCKWLKSELELQGIASFVADRAKYSDTQSHEIADRIICSVAFGVIVVTMSSFLNP 240
Query: 241 FSLEEIRFFAQKKNLVPILFDTEPPEIAGLFDGKLEDKEGKEAFEGLMRCHEFKLEANET 300
FSLEEIRFFAQKKNLVPILFDTEPPEIAGLFDGKLEDKEGKEAFEGLMRCHEFKLEANET
Sbjct: 241 FSLEEIRFFAQKKNLVPILFDTEPPEIAGLFDGKLEDKEGKEAFEGLMRCHEFKLEANET 300
Query: 301 NWRSCVSKTVTLLRSKLGRKSIAEKESEGPEGMPFPRNRHFVGREKELSEIEGMFFGSTV 360
NWRSCVSKTVTLLRSKLGRKSIAEKESEGPEGMPFPRNRHFVGREKELSEIEGMFFGSTV
Sbjct: 301 NWRSCVSKTVTLLRSKLGRKSIAEKESEGPEGMPFPRNRHFVGREKELSEIEGMFFGSTV 360
Query: 361 DIQEVDCPRGSAANDRSSGVSDGFADEESDTVRTSNARYISLEMRKCKEPTLEAWIDPVI 420
DIQEVDCPRGSAANDRSSGVSDGFADEESDTVRTSNARYISLEMRKCKEPTLEAWIDPVI
Sbjct: 361 DIQEVDCPRGSAANDRSSGVSDGFADEESDTVRTSNARYISLEMRKCKEPTLEAWIDPVI 420
Query: 421 ELSSGKGRNLQKQRSKHRRSRFRCNSKGYGSASVLCITGSSGIGKTELALEFAYRYSQRY 480
ELSSGKGRNLQKQRSKHRRSRFRCNSKGYGSASVLCITGSSGIGKTELALEFAYRYSQRY
Sbjct: 421 ELSSGKGRNLQKQRSKHRRSRFRCNSKGYGSASVLCITGSSGIGKTELALEFAYRYSQRY 480
Query: 481 KMVLWIGGEARYLRQNILNLSMNLGLDISAEAEKERGRIRSFEEQEFDAFQRVKRELFRD 540
KMVLWIGGEARYLRQNILNLSMNLGLDISAEAEKERGRIRSFEEQEFDAFQRVKRELFRD
Sbjct: 481 KMVLWIGGEARYLRQNILNLSMNLGLDISAEAEKERGRIRSFEEQEFDAFQRVKRELFRD 540
Query: 541 VPYLLVIDNLESERDWWEGKDLHDFIPRNTGATHVIVTTRLPRVINLEPMQLPQLSYNDA 600
VPYLLVIDNLESERDWWEGKDLHDFIPRNTGATHVIVTTRLPRVINLEPMQLPQLSYNDA
Sbjct: 541 VPYLLVIDNLESERDWWEGKDLHDFIPRNTGATHVIVTTRLPRVINLEPMQLPQLSYNDA 600
Query: 601 MILIKGKQKNDYPPEEMEVLRKLDERLGRLSFGLWIVGSLLSELMITPSTLFEAVERISL 660
MILIKGKQKNDYPPEEMEVLRKLDERLGRLSFGLWIVGSLLSELMITPSTLFEAVERISL
Sbjct: 601 MILIKGKQKNDYPPEEMEVLRKLDERLGRLSFGLWIVGSLLSELMITPSTLFEAVERISL 660
Query: 661 NESLFPLGANDDGFCRNNSFLIKVLVFCFALMDRAKGGSLTSKMIIAGSWLAPAPVSSTL 720
NESLFPLGANDDGFCRNNSFLIKVLVFCFALMDRAKGGSLTSKMIIAGSWLAPAPVSSTL
Sbjct: 661 NESLFPLGANDDGFCRNNSFLIKVLVFCFALMDRAKGGSLTSKMIIAGSWLAPAPVSSTL 720
Query: 721 LAATASKLPMKGSMHLLGESLKTAFLCGTHCFLAPHGRKAEVESALLLVKLGLARKATRH 780
LAATASKLPMKGSMHLLGESLKTAFLCGTHCFLAPHGRKAEVESALLLVKLGLARKATRH
Sbjct: 721 LAATASKLPMKGSMHLLGESLKTAFLCGTHCFLAPHGRKAEVESALLLVKLGLARKATRH 780
Query: 781 PGCWIQFHPITQLFGKIRGGLAPTTAAVNGVMRAGNPSVYSDHLWASAFLVFGFKSEPPS 840
PGCWIQFHPITQLFGKIRGGLAPTTAAVNGVMRAGNPSVYSDHLWASAFLVFGFKSEPPS
Sbjct: 781 PGCWIQFHPITQLFGKIRGGLAPTTAAVNGVMRAGNPSVYSDHLWASAFLVFGFKSEPPS 840
Query: 841 VQLKAVDMVHFIRKTALPLAIDSFMTFSRCGSALELLKVCTNVLEEVEKSYASRIQDLNR 900
VQLKAVDMVHFIRKTALPLAIDSFMTFSRCGSALELLKVCTNVLEEVEKSYASRIQDLNR
Sbjct: 841 VQLKAVDMVHFIRKTALPLAIDSFMTFSRCGSALELLKVCTNVLEEVEKSYASRIQDLNR 900
Query: 901 GSLCWRKKLQPNHRVDEFVWQEVTLLKATLLETRAKLLLRGGLFDTGEELCRTCISIRTV 960
GSLCWRKKLQPNHRVDEFVWQEVTLLKATLLETRAKLLLRGGLFDTGEELCRTCISIRTV
Sbjct: 901 GSLCWRKKLQPNHRVDEFVWQEVTLLKATLLETRAKLLLRGGLFDTGEELCRTCISIRTV 960
Query: 961 MLGHGHAHTLAAQETLAKLVRYRSKI 986
MLGHGHAHTLAAQETLAKLVRYRSKI
Sbjct: 961 MLGHGHAHTLAAQETLAKLVRYRSKI 986
>Os09g0481600 Conserved hypothetical protein
Length = 506
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/506 (80%), Positives = 449/506 (88%), Gaps = 1/506 (0%)
Query: 482 MVLWIGGEARYLRQNILNLSMNLGLDISAEAEKERGRIRSFEEQEFDAFQRVKRELFRDV 541
MVLWIGGEARYLRQNILNLSM LGLDISAEAEKERGRIRSFEEQE DAFQRVKRELFRDV
Sbjct: 1 MVLWIGGEARYLRQNILNLSMYLGLDISAEAEKERGRIRSFEEQEHDAFQRVKRELFRDV 60
Query: 542 PYLLVIDNLESERDWWEGKDLHDFIPRNTGATHVIVTTRLPRVINLEPMQLPQLSYNDAM 601
PYLL+IDN+++ERDWWEGKDLHDFIPRNTGA+HVIVTTRLP V+N+EPMQL QLS+ +A+
Sbjct: 61 PYLLIIDNIDNERDWWEGKDLHDFIPRNTGASHVIVTTRLPVVMNIEPMQLLQLSFPEAV 120
Query: 602 ILIKGKQKNDYPPEEMEVLRKLDERLGRLSFGLWIVGSLLSELMITPSTLFEAVERISLN 661
IL+K K K DYP EE+EVLRK DERLG LSFGLWIV SLLSELMI PSTLFEAV++ISL+
Sbjct: 121 ILMKRKMKEDYPSEEIEVLRKFDERLGGLSFGLWIVSSLLSELMIAPSTLFEAVDQISLS 180
Query: 662 ESLFPLGANDDGFCRNNSFLIKVLVFCFALMDRAKGGSLTSKMIIAGSWLAPAPVSSTLL 721
+++ LGAND+ +NN FLIKVLVFCFALMDR KGGSL +MI AGSWLAPAP+SSTLL
Sbjct: 181 DTMLALGANDESLWQNNLFLIKVLVFCFALMDRVKGGSLALRMITAGSWLAPAPMSSTLL 240
Query: 722 AATASKLPMKG-SMHLLGESLKTAFLCGTHCFLAPHGRKAEVESALLLVKLGLARKATRH 780
A ASKLP K S+ L GESLKTA LCGTHCFLAP +KAEVES+LLLVKLGLAR+ T H
Sbjct: 241 ATMASKLPTKANSIQLWGESLKTALLCGTHCFLAPQAKKAEVESSLLLVKLGLARRTTHH 300
Query: 781 PGCWIQFHPITQLFGKIRGGLAPTTAAVNGVMRAGNPSVYSDHLWASAFLVFGFKSEPPS 840
PG WIQFHPI LFGKIRGGLAP TAAV+GV+R+ N SVYSDH+WASAFLVFGFKSEPP
Sbjct: 301 PGFWIQFHPIMLLFGKIRGGLAPATAAVSGVIRSRNISVYSDHMWASAFLVFGFKSEPPV 360
Query: 841 VQLKAVDMVHFIRKTALPLAIDSFMTFSRCGSALELLKVCTNVLEEVEKSYASRIQDLNR 900
VQLK DMV FI+K ALPLAI +FMTFSRCGSALELLKVCTN+LE+ EKS ASRIQDL +
Sbjct: 361 VQLKPGDMVLFIKKMALPLAIQAFMTFSRCGSALELLKVCTNILEDAEKSLASRIQDLKQ 420
Query: 901 GSLCWRKKLQPNHRVDEFVWQEVTLLKATLLETRAKLLLRGGLFDTGEELCRTCISIRTV 960
G LCW+KKLQ N DEF+WQEVTLLKATLLETRAKLL+RGGLFD+GEELCRTCISIRTV
Sbjct: 421 GPLCWKKKLQTNSHADEFIWQEVTLLKATLLETRAKLLMRGGLFDSGEELCRTCISIRTV 480
Query: 961 MLGHGHAHTLAAQETLAKLVRYRSKI 986
MLGH H+ TLAAQETLAKLVRYRSKI
Sbjct: 481 MLGHDHSQTLAAQETLAKLVRYRSKI 506
>Os01g0760400 Disease resistance protein family protein
Length = 1002
Score = 591 bits (1524), Expect = e-169, Method: Compositional matrix adjust.
Identities = 342/877 (38%), Positives = 517/877 (58%), Gaps = 71/877 (8%)
Query: 154 FTRGSVASPSSNA----KLRSCDVYIGYHG-NGSLGRFCKWLKSELELQGIASFVADRAK 208
+ + S + P+++A +LRS DVYIG+HG SL RF WL++ELE+ GI+ F +DR++
Sbjct: 150 YRKSSSSQPTTSATSVNRLRSFDVYIGFHGRKASLLRFTNWLRAELEIHGISCFASDRSR 209
Query: 209 YSDTQSHEIADRIICSVAFGVIVVTMSSFLNPFSLEEIRFFAQKKNLVPILFDTEPP--- 265
+ SH+ +RI+ + +GV+++T SF NP+++EE+R F KKNL+PI FD
Sbjct: 210 CRSSHSHDTIERIMNASTYGVVILTRKSFGNPYTIEELRNFFGKKNLIPIFFDLGAADCL 269
Query: 266 -----------------EIAGLFDGKLEDKEGKEAFEGLMRCHEFKLEANETNWRSCVSK 308
E+ L+ G ++E +E+ + L R + +LEAN+ NWR C+ +
Sbjct: 270 ARDIIEKRGELWERHGGELWMLYGGM--EQEWRESVDALSRVSDVQLEANDGNWRHCILQ 327
Query: 309 TVTLLRSKLGRKSIAEKESEG-----PEGMPFPRNRHFVGREKELSEIEGMFFGSTVDIQ 363
T+ +L +KLGR+S+ ++ + E PFPRN FVGR+KELSE+E + FG
Sbjct: 328 TIIVLATKLGRRSVVDRVNRWRGRVEKEEFPFPRNADFVGRKKELSELELILFGDVSGDG 387
Query: 364 EVDCPRGSAANDRSSGVSDGFADEESDTVRTSNARYISLEMRKCKEPTLEAWIDPVIELS 423
E + R G+ G + + V T + K KEP L IE+
Sbjct: 388 EREYFE-IKTKQRRKGLVIGRSVNNYEQVNTDDG--------KGKEPVLWKETKENIEMQ 438
Query: 424 S-----GKGR-NLQKQRSKHRRSRFRCNSKGYGSASVLCITGSSGIGKTELALEFAYRYS 477
GR + K ++ R R RC YG + CI+G SGIGKT+L LE+AYR+S
Sbjct: 439 RLGSPPRHGRPSRTKNDGRYGRKR-RCRKILYGKG-IACISGESGIGKTDLVLEYAYRFS 496
Query: 478 QRYKMVLWIGGEARYLRQNILNLSMNLGLDISAEAE-KERGRIRSFEEQEFDAFQRVKRE 536
QRYKMVLW+ GE+RY+RQN L L L +D+S ++ E+G R FEEQE +A ++++E
Sbjct: 497 QRYKMVLWVRGESRYIRQNYLALRTFLEVDLSVDSHLHEKGSDRCFEEQEEEAIAKIRQE 556
Query: 537 LFRDVPYLLVIDNLESERDWWEGKDLHDFIPRNTGATHVIVTTRLPRVINLEPMQLPQLS 596
L RD+P+L++IDNLESE+DWW+ + + D +P G TH I+TTRLPRV+NLEPM+L LS
Sbjct: 557 LMRDIPFLVIIDNLESEKDWWDKRVITDLLPHFGGETHFIITTRLPRVMNLEPMKLSYLS 616
Query: 597 YNDAMILIKGKQKNDYPPEEMEVLRKLDERLGRLSFGLWIVGSLLSELMITPSTLFEAVE 656
+AM L+KG K DYP E++ L+ ++E+LGRL+ GL IVGS+LSEL ITPS L + +
Sbjct: 617 GAEAMSLMKGGVK-DYPLVEIDALKAIEEKLGRLTLGLGIVGSILSELPITPSRLLDTLS 675
Query: 657 RI------SLNESLFPLGANDDGFCRNNSFLIKVLVFCFALMDRAKG-GSLTSKMIIAGS 709
R S NE D +N+ L+++L C ++ D A G SL ++M+
Sbjct: 676 RTLPIRDCSWNE-------RDAISLKNHEILVRLLDVCLSIFDHADGPRSLATRMVQVCG 728
Query: 710 WLAPAPVSSTLLAATASKLPMKGSMHLLGESLKTAFLCGTHCFLAPHGRKAEVESALLLV 769
W AP+ V +LA A K+P K H G + + T +++E E+A +L+
Sbjct: 729 WFAPSAVPIHMLALAAHKVPKK---HRRGPRWRKWWRTLTCGLATSRMKRSEAEAAAMLM 785
Query: 770 KLGLARKATRHPGCWIQFHPITQLFGKIRGGLAPTTAAVNGVMRAGNPSVYSDHLWASAF 829
+ G+AR +T+ ++QFH + +L+ + RGG A V + G+ S+HLWA+ F
Sbjct: 786 RFGIARCSTKPE--YVQFHDLIRLYARKRGGTRMAQAVVQSIYLRGSIKHSSEHLWAACF 843
Query: 830 LVFGFKSEPPSVQLKAVDMVHFIRKTALPLAIDSFMTFSRCGSALELLKVCTNVLEEVEK 889
+ FGF S+P V+ + +++ F+++ +PLAI++F+T+SRC +ALELL++CT LE
Sbjct: 844 MFFGFGSDPFLVEPRPSELIFFVKQIVVPLAINTFITYSRCNAALELLRLCTEALERAAD 903
Query: 890 SYASRIQDLNRGSLCWRKKLQPNHRVDEFVWQEVTLLKATLLETRAKLLLRGGLFDTGEE 949
S S L + Q + ++WQE+ LLKA++LETRAKL+LRGG +DTG++
Sbjct: 904 SMLSHAGKWRETPLSCFRPTQSEAQYT-YLWQELALLKASVLETRAKLMLRGGQYDTGDD 962
Query: 950 LCRTCISIRTVMLGHGHAHTLAAQETLAKLVRYRSKI 986
L R I I T + G H +T++A+ETL+KL R + +
Sbjct: 963 LIRKAIFILTSICGEHHPNTVSARETLSKLTRLLTNV 999
>Os11g0576100
Length = 849
Score = 269 bits (687), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 252/845 (29%), Positives = 381/845 (45%), Gaps = 136/845 (16%)
Query: 185 RFCKWLKSELELQGIASFVADRAKYSDTQSHEIADRIICSVAFGVIVVTMSSFLNPFSLE 244
RF WL +E+E G+ ADR + D SH A + +V GV+VVT +S NP+ ++
Sbjct: 93 RFVAWLCAEMEALGVRCVAADRRRCRDAPSHAAARAAMDAVVAGVVVVTPASLGNPYCVD 152
Query: 245 EIRFFAQKKNLVPILFDTEPPEIAGLFDGKLEDK-EGKEAFEGLMRCHEFKL-EANETNW 302
EIR F +K LVP+ G D + ED E + G H +K+ + E +W
Sbjct: 153 EIRAFVEKGRLVPVFVGL------GKGDCRAEDVVEKRGDLWGRFGGHLWKVYDGGERDW 206
Query: 303 RSCVSKTVTLLRSKLGRKSIAEKESEGPEGMPFPRNRHFVGREKELSEIEGMFFGSTVDI 362
R V G S A+ E + RH R +L EI G G
Sbjct: 207 REAV-----------GALSRADPAVE----VDAASQRH---RLIDLLEIVGSRLGRRAVT 248
Query: 363 QEVDCPRGSAA---------NDRSSGVSDGFADEESDTVRTSNARYISLEMRKCKEPTLE 413
V R +AA N+R G D E+ + +E+ C EP
Sbjct: 249 DAVRSWRAAAAVHPELPFARNERFVGRESELLDLEAVLFGKRPMHLVEVEV-FCGEP--- 304
Query: 414 AWIDPVIELSSGKGRNLQKQRSKHRRSRFRCNSKGYGSASVLCITGSSGIGKTELALEFA 473
A++D V+CI+G+SG GKTEL LE+A
Sbjct: 305 AFMD-----------------------------------GVVCISGASGAGKTELVLEYA 329
Query: 474 YRYSQRYKMVLWIGGEARYLRQNILNLSMNLGLDI----------------SAEAEKERG 517
+R++ YK VLW+ GEARYLR L L+ LGL + S +AEKE
Sbjct: 330 HRHAMEYKKVLWVRGEARYLRMGYLKLADQLGLAVGDDLSLIAAGDRRSSGSKKAEKE-- 387
Query: 518 RIRSFEEQEFDAFQRVKRELFRDVPYLLVIDNLESERDWWEGKDLHDFIPRNTGA----T 573
F E DA ++++EL R++PYLLVIDNLESE DWW+ +D+ D +P +
Sbjct: 388 --WIFRGLESDAIAKIRKELTREIPYLLVIDNLESETDWWDSRDVQDLLPGAVAGAAVRS 445
Query: 574 HVIV-TTRLPRVINLEPMQL-PQLSYNDAMILIKGKQKNDYPPEEMEV-LRKLDERLGRL 630
HVI+ TTRL R+ + L P + +AM+L+ + EE + LR + +++G +
Sbjct: 446 HVIITTTRLRRLQRVRTFSLAPSMESPEAMLLMTRNGALAFHGEEDTIALRAIQQKVGSI 505
Query: 631 SFGLWIVGSLLSELMITPSTLFEAVERISLNESLFPLGANDDGFCRNNSFLIKVLVFCFA 690
L +VG++LSEL ++P+ L +A+ + ND R+N ++++L CFA
Sbjct: 506 PLALALVGAVLSELAVSPAELRQAMNDAPYRAPTWE--ENDAPALRDNPGMVQLLDVCFA 563
Query: 691 LMDRAKG--GSLTSKMIIAGSWLAPAPVSSTLLAATASKLP-------MKGSMHLLGESL 741
L+D K G +M+ S+ AP+P+ LLAA P MK ++ L S
Sbjct: 564 LLDEEKDGLGEAAVRMVETSSFFAPSPIPVALLAAAMGGEPKRPLWKQMKLALRLSCSSS 623
Query: 742 KTAFLCGTHCFLAPHGRKAEVESALLLVKLGLARKATRHPGCWIQFHPITQLFGKIRGGL 801
+ A + AE E+ + L++LG+AR+ T P + H + +LFG R +
Sbjct: 624 RRALDKDSSSRRRAAAAAAEPEALVALLRLGIARRCTTQPAPCVSVHRVFRLFG--RKAV 681
Query: 802 APTTAAVNGVMRAGNPS-VYSDHLWASAFLVFGFKSEPP-SVQLKAVDMVHFIRKTALPL 859
AA +RA + V+ +H WA+ V FK P + L ++ F+ A+PL
Sbjct: 682 GSGEAAARSTVRAITAAEVHDEHAWAACMSV--FKIAPAIAANLPTKELPQFVTHVAVPL 739
Query: 860 AIDSFMTFSRCGSALELLKVCTNVLEEVEKSY-ASRIQDLNRGSLCWRKKLQPNHRVDEF 918
A + S + +LL +NV+ E Y AS D N
Sbjct: 740 AARGVVAHSAYAAVTDLLVESSNVVRGEESRYVASGGLDENPA----------------- 782
Query: 919 VWQEVTLLKATLLETRAKLLLRGGLFDTGEELCRTCISIRTVMLGHGHAHTLAAQETLAK 978
++ E+ +A LL+ RAKL+LRGG F E+ I I V+ G T A+ L +
Sbjct: 783 LYHELAHSRAQLLKLRAKLMLRGGEFTLAEDHSLAVIHILEVVAGDDDPETEEARAALDR 842
Query: 979 LVRYR 983
+++ +
Sbjct: 843 VLQVQ 847
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,797,618
Number of extensions: 1390160
Number of successful extensions: 3532
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3517
Number of HSP's successfully gapped: 5
Length of query: 986
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 875
Effective length of database: 11,240,047
Effective search space: 9835041125
Effective search space used: 9835041125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)