BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0475400 Os09g0475400|AK071315
(504 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0475400 Basic helix-loop-helix dimerisation region bHL... 772 0.0
Os08g0490000 Basic helix-loop-helix dimerisation region bHL... 405 e-113
Os02g0726700 Basic helix-loop-helix dimerisation region bHL... 168 1e-41
>Os09g0475400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 504
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/504 (79%), Positives = 403/504 (79%)
Query: 1 MGIQGNKATTREHDFLSLYTTAAKDPSLQLHDAKPPPPSQGFFLRTHDFLXXXXXXXXXX 60
MGIQGNKATTREHDFLSLYTTAAKDPSLQLHDAKPPPPSQGFFLRTHDFL
Sbjct: 1 MGIQGNKATTREHDFLSLYTTAAKDPSLQLHDAKPPPPSQGFFLRTHDFLQPLEKPTPAP 60
Query: 61 XXXXXXXXXXXXXXXXXGGIGTFSISHXXXXXXXXXXXXXXEPTPFXXXXXXXXXXXXXX 120
GGIGTFSISH EPTPF
Sbjct: 61 TPPPTSQLQQQQQQAFPGGIGTFSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHP 120
Query: 121 XXXXXXXXXXXXXTLPFAGVGQVAATAARQQQEWKGRVGGGGFMXXXXXXXXXXXXXXXX 180
TLPFAGVGQVAATAARQQQEWKGRVGGGGFM
Sbjct: 121 VAALGHHHHHHQWTLPFAGVGQVAATAARQQQEWKGRVGGGGFMDSGSRSSGGAGFDDDD 180
Query: 181 XXXXXXEVSSSLKELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFQIL 240
EVSSSLKELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFQIL
Sbjct: 181 GVAARREVSSSLKELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFQIL 240
Query: 241 RELLPHSDQKRDKATFLLEVIEYIRFLQEKVQKFEASVPEWNQENAKILPWSNIYFRSFW 300
RELLPHSDQKRDKATFLLEVIEYIRFLQEKVQKFEASVPEWNQENAKILPWSNIYFRSFW
Sbjct: 241 RELLPHSDQKRDKATFLLEVIEYIRFLQEKVQKFEASVPEWNQENAKILPWSNIYFRSFW 300
Query: 301 KNSQSKGQNPGDDLPDPSQFIRNGSSSGYNFTGKPDDNHNMVTSAAASGAQELVETDHAA 360
KNSQSKGQNPGDDLPDPSQFIRNGSSSGYNFTGKPDDNHNMVTSAAASGAQELVETDHAA
Sbjct: 301 KNSQSKGQNPGDDLPDPSQFIRNGSSSGYNFTGKPDDNHNMVTSAAASGAQELVETDHAA 360
Query: 361 SVSYRSAETPTNITNNVTSQAQAQWASPAGVDDCAMNSEMLNNQQLAIDEGTIXXXXXXX 420
SVSYRSAETPTNITNNVTSQAQAQWASPAGVDDCAMNSEMLNNQQLAIDEGTI
Sbjct: 361 SVSYRSAETPTNITNNVTSQAQAQWASPAGVDDCAMNSEMLNNQQLAIDEGTISLSSQYS 420
Query: 421 XXXXGTLTHALESSGVDLSQSSISVQINLGKRAVKRPGADGSSSSKELPSTSANNENMGH 480
GTLTHALESSGVDLSQSSISVQINLGKRAVKRPGADGSSSSKELPSTSANNENMGH
Sbjct: 421 QQLLGTLTHALESSGVDLSQSSISVQINLGKRAVKRPGADGSSSSKELPSTSANNENMGH 480
Query: 481 QLTMLGGGTEELPHPTKRHKSGNS 504
QLTMLGGGTEELPHPTKRHKSGNS
Sbjct: 481 QLTMLGGGTEELPHPTKRHKSGNS 504
>Os08g0490000 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 508
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/351 (60%), Positives = 252/351 (71%), Gaps = 5/351 (1%)
Query: 157 RVGGGGFMXXXXXXXXXXXXXXXXXXXXXXEVSSSLKELTVRVDGKGGSCSGS-GTDQRP 215
R GGGGFM EVSSSLKELTVRV+GKGGSCSGS GTDQ P
Sbjct: 160 RKGGGGFMDAGSRSSGGAGFDDDDGHAARREVSSSLKELTVRVEGKGGSCSGSAGTDQMP 219
Query: 216 SSPRSKHSATEQRRRSKINDRFQILRELLPHSDQKRDKATFLLEVIEYIRFLQEKVQKFE 275
++PRSKHSATEQRRRSKINDRFQ+LR+LLPH+DQKRDKA+FLLEVIEYIRFLQEKVQK+E
Sbjct: 220 NTPRSKHSATEQRRRSKINDRFQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYE 279
Query: 276 ASVPEWNQENAKILPWSNIYFRSFWKNSQSKGQNPGDDLPDPSQFIRNGSSSGYNFTGKP 335
S PEWNQENAK++PW+NIYFRS WKN+Q+KGQ P D PDP + ++NGS + FTG
Sbjct: 280 VSYPEWNQENAKVVPWTNIYFRSSWKNAQNKGQVPADHSPDPPELLKNGSPYMFPFTGN- 338
Query: 336 DDNHNMVTSAAASGAQELVETDHAASVSYRSAETPT--NITNNVTSQAQAQWASPAGVDD 393
DN+N V +AAASGAQ+ ETD + VSYRS +TP+ N+ + VTSQ AQ P+ ++
Sbjct: 339 SDNNNAVETAAASGAQDQAETDPMSRVSYRSVDTPSPNNVADKVTSQPHAQLVRPSPAEN 398
Query: 394 CAMNSEMLNNQQLAIDEGTIXXXXXXXXXXXGTLTHALESSGVDLSQSSISVQINLGKRA 453
+N + LNN LAIDEGTI L HALE+SG+DLSQ+SISVQINLGKRA
Sbjct: 399 HTVNCDKLNNSDLAIDEGTISLSSQYSQELLNKLNHALENSGIDLSQASISVQINLGKRA 458
Query: 454 VKRPGADGSSSSKELPSTSANNENMGHQLTMLGGGTEELPHPTKRHKSGNS 504
+KR +S+SKEL ++N++ MG QL LG G EE +KRHKS NS
Sbjct: 459 MKRSTPAATSTSKELTDPASNSQAMGRQL-RLGDGAEEHRQASKRHKSDNS 508
>Os02g0726700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 344
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 96/120 (80%)
Query: 204 GSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFQILRELLPHSDQKRDKATFLLEVIEY 263
G S S DQ PS+PRSKHSATEQRRR+KINDR +ILRELLPH+DQKRDKA+FL EVIEY
Sbjct: 132 GRSSASSADQGPSTPRSKHSATEQRRRTKINDRLEILRELLPHTDQKRDKASFLSEVIEY 191
Query: 264 IRFLQEKVQKFEASVPEWNQENAKILPWSNIYFRSFWKNSQSKGQNPGDDLPDPSQFIRN 323
IRFLQEKVQK+E + PE N E++K +PW+ +Y+RS W+N+++ Q G+DL +Q + N
Sbjct: 192 IRFLQEKVQKYEEADPERNHEDSKSMPWAKVYYRSCWRNTKNTSQVQGEDLSPSTQDMNN 251
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.127 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,508,951
Number of extensions: 595287
Number of successful extensions: 2077
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2098
Number of HSP's successfully gapped: 3
Length of query: 504
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 399
Effective length of database: 11,553,331
Effective search space: 4609779069
Effective search space used: 4609779069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)