Os02g0726700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os02g0726700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.86 | 0.611 | 3.93 | 1.62 | 0.748 | 1.62 | 0.305 | 1.66 | 0.832 | 4.62 | 30.36 | 252 | -- | -- |
| 171.24 | 0.609 | 3.89 | 1.86 | 0.763 | 1.58 | 0.589 | -- | 0.886 | 4.62 | 30.88 | 249 | -- | -- |
| 169.04 | 0.606 | 3.93 | 1.58 | 0.743 | 1.63 | -- | 1.88 | 0.821 | 4.67 | 30.46 | 247 | -- | -- |
| 172.6 | 0.612 | 3.9 | 1.9 | 0.754 | 1.66 | -- | -- | 0.887 | 4.6 | 31.4 | 251 | -- | -- |
| 189.75 | 0.642 | 3.92 | 1.73 | -- | 2.34 | -- | 2.11 | 0.933 | -- | 31.16 | 240 | -- | -- |
| 203.58 | 0.669 | 3.96 | 1.51 | 1.26 | -- | 1.01 | -- | 0.603 | 4.5 | -- | -- | -- | -- |
| 206.35 | 0.673 | 3.96 | 1.5 | 1.26 | -- | -- | -- | 0.597 | 4.54 | -- | -- | -- | -- |
| 193.86 | 0.648 | 3.88 | 2.09 | -- | 2.4 | -- | -- | 1.01 | -- | 32.09 | 241 | -- | -- |
| 257.37 | 0.747 | 3.97 | -- | 1.06 | 0.859 | -- | -- | 0.543 | 4.19 | 63 | 393 | -- | -- |
| 291.56 | 0.798 | 3.97 | 1.55 | -- | -- | -- | -- | 0.63 | -- | -- | -- | -- | -- |
| 266.03 | 0.763 | 4 | -- | 1.29 | -- | -- | -- | 0.43 | 4.51 | -- | -- | -- | -- |
| 300.23 | 0.807 | 3.96 | -- | -- | 1.86 | -- | -- | 0.665 | -- | 58.78 | 226 | -- | -- |
| 355.24 | 0.88 | 4.01 | -- | -- | -- | -- | -- | 0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.39 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 2 | 165.49 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 165.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 5 | 166.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 6 | 166.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 12 | 167.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 14 | 168.16 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 15 | 168.16 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 18 | 168.33 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 19 | 168.33 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 26 | 168.51 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 46 | 168.92 | wind | 7.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 47 | 168.93 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 51 | 168.99 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 68 | 169.26 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 70 | 169.31 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 71 | 169.32 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 74 | 169.34 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 19 | 9 |
| 81 | 169.45 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 83 | 169.49 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 91 | 169.54 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 101 | 169.58 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 118 | 169.66 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 136 | 169.73 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 141 | 169.75 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 142 | 169.75 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 151 | 169.80 | temperature | 20.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 157 | 169.81 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 164 | 169.83 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 245 | 169.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 250 | 169.93 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 266 | 169.95 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 278 | 169.99 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 301 | 170.06 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 313 | 170.10 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 339 | 170.21 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 347 | 170.23 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 349 | 170.24 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 383 | 170.33 | temperature | 15.0 | 720 | > th | dose dependent | no | NA | NA |
| 429 | 170.47 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 434 | 170.49 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 436 | 170.50 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 454 | 170.56 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 458 | 170.58 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 464 | 170.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 476 | 170.65 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 483 | 170.66 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 547 | 170.83 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 582 | 170.92 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 590 | 170.95 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 638 | 171.07 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 666 | 171.13 | temperature | 20.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 694 | 171.18 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 699 | 171.19 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 714 | 171.22 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 762 | 171.32 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 845 | 171.50 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 849 | 171.50 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 874 | 171.57 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 935 | 171.69 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 957 | 171.71 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 985 | 171.75 | temperature | 25.0 | 720 | < th | dose dependent | sin | 22 | NA |