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Os09g0475400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0199) R2 : 0.892
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.34 (0.0706) R2dC : 0.481 R2C : 0.783
β3 : -1.1 (0.0713) R2dE : 0.106 R2E : 0.412
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0937 (0.0423) R2dN8 : 0.00153 R2N8 : 0.000705
σ : 0.373
deviance : 64.1
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_____
C
peak time of C : 5.22
E
wheather : temperature
threshold : 19.7
memory length : 267
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.73
open length of G : 20.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.3 0.365 11.1 -0.183 2.25 -1.2 -1.39 -1.1 -0.135 5.18 19.73 266 4.8 20.2
62.95 0.37 11.1 -0.113 2.35 -1.08 -0.602 -- -0.112 5.21 19.6 264 4.72 20.3
63.16 0.37 11.1 -0.165 2.33 -1.1 -- -0.444 -0.135 5.22 19.6 256 4.79 20.4
63.78 0.372 11.1 -0.112 2.36 -1.07 -- -- -0.109 5.22 19.67 264 4.75 20.3
177.43 0.62 11 -0.463 -- -2.23 -- -1.08 -0.275 -- 18.1 206 7.11 17.6
93.13 0.452 11.1 -0.397 3.08 -- -0.318 -- -0.239 5.12 -- -- -- --
93.38 0.453 11.1 -0.397 3.08 -- -- -- -0.237 5.13 -- -- -- --
123.01 0.517 11.2 0.0574 -- -2.42 -- -- 0.00237 -- 19.4 307 7.61 15.2
64.1 0.373 11.1 -- 2.34 -1.1 -- -- -0.0937 5.22 19.7 267 4.73 20.3
591.09 1.14 11.1 -0.287 -- -- -- -- -0.159 -- -- -- -- --
97.53 0.462 11.1 -- 3.08 -- -- -- -0.193 5.13 -- -- -- --
97.97 0.461 11.1 -- -- -2.67 -- -- -0.174 -- 18.21 353 7.58 13.9
593.26 1.14 11.1 -- -- -- -- -- -0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.15 temperature 20.0 270 > th dose independent rect. 5 20
6 64.10 temperature 20.0 270 > th dose independent rect. 21 3
8 64.71 temperature 20.0 270 > th dose independent rect. 19 6
10 64.96 temperature 10.0 270 > th dose dependent rect. 20 14
13 65.66 temperature 15.0 270 > th dose dependent rect. 21 3
25 67.20 temperature 10.0 90 > th dose dependent rect. 6 20
34 67.72 temperature 10.0 270 > th dose dependent rect. 6 18
50 68.72 temperature 15.0 10 > th dose dependent rect. 23 3
55 68.89 temperature 10.0 10 > th dose dependent rect. 6 21
73 69.60 temperature 20.0 10 > th dose independent rect. 23 3
81 69.72 temperature 25.0 90 < th dose independent rect. 2 9
91 70.01 temperature 20.0 270 > th dose independent rect. 20 15
130 70.82 precipitation 0.1 270 < th dose independent rect. 1 4
131 70.82 precipitation 0.1 270 < th dose dependent rect. 1 4
132 70.85 wind 5.0 270 < th dose independent rect. 1 4
133 70.87 temperature 25.0 270 < th dose independent rect. 24 9
136 70.98 wind 9.0 270 < th dose dependent rect. 1 4
149 71.17 radiation 20.0 270 < th dose dependent rect. 24 9
157 71.26 wind 3.0 270 < th dose independent rect. 2 2
172 71.45 wind 7.0 270 < th dose independent rect. 5 20
181 71.52 radiation 10.0 270 < th dose independent rect. 24 9
186 71.53 temperature 30.0 90 < th dose dependent rect. 2 10
202 71.69 wind 7.0 270 < th dose dependent rect. 2 2
207 71.74 temperature 10.0 270 > th dose independent rect. 1 4
209 71.74 temperature 30.0 270 < th dose independent rect. 1 4
210 71.74 humidity 50.0 270 > th dose independent rect. 1 4
213 71.74 atmosphere 995.0 270 > th dose independent rect. 1 4
214 71.74 atmosphere 1010.0 270 < th dose independent rect. 1 4
216 71.74 radiation 1.0 270 < th dose independent rect. 1 4
221 71.74 temperature 10.0 270 > th dose independent rect. 5 20
222 71.74 radiation 10.0 270 < th dose dependent rect. 1 4
229 71.76 radiation 20.0 43200 < th dose dependent rect. 22 5
238 71.81 humidity 50.0 90 > th dose dependent rect. 21 5
257 71.93 temperature 15.0 10 > th dose dependent rect. 23 15
266 72.02 radiation 10.0 270 < th dose dependent rect. 1 6
275 72.12 precipitation 0.1 270 < th dose independent rect. 5 20
277 72.12 precipitation 0.1 270 < th dose dependent rect. 5 20
281 72.14 wind 7.0 10 < th dose dependent rect. 2 6
284 72.15 temperature 30.0 10 < th dose dependent rect. 2 10
294 72.19 precipitation 0.1 270 < th dose independent rect. 21 2
295 72.19 precipitation 0.1 270 < th dose dependent rect. 21 2
322 72.25 precipitation 0.1 270 < th dose independent rect. 2 2
323 72.25 precipitation 0.1 270 < th dose dependent rect. 2 2
333 72.29 wind 5.0 270 < th dose independent rect. 21 3
335 72.30 wind 9.0 90 < th dose dependent rect. 21 5
348 72.34 humidity 50.0 270 > th dose dependent rect. 21 3
367 72.42 atmosphere 1015.0 270 < th dose independent rect. 21 2
370 72.43 wind 1.0 270 > th dose independent rect. 21 2
378 72.47 radiation 1.0 270 < th dose dependent rect. 1 18
383 72.52 precipitation 0.1 90 < th dose independent rect. 21 5
384 72.52 precipitation 0.1 270 < th dose independent rect. 24 21
385 72.52 precipitation 0.1 90 < th dose dependent rect. 21 5
387 72.52 precipitation 0.1 270 < th dose dependent rect. 24 21
389 72.53 atmosphere 1015.0 90 < th dose independent rect. 21 5
397 72.57 wind 5.0 90 < th dose independent rect. 21 5
431 72.69 temperature 10.0 270 > th dose independent rect. 21 3
432 72.69 temperature 30.0 270 < th dose independent rect. 21 3
433 72.69 humidity 50.0 270 > th dose independent rect. 21 3
436 72.69 atmosphere 995.0 270 > th dose independent rect. 21 3
437 72.69 radiation 1.0 270 < th dose independent rect. 21 3
443 72.69 humidity 80.0 90 > th dose independent rect. 21 5
444 72.69 temperature 10.0 270 > th dose independent rect. 24 21
445 72.69 radiation 1.0 270 < th dose dependent rect. 21 2
472 72.72 wind 9.0 270 < th dose independent rect. 21 3
473 72.72 temperature 10.0 90 > th dose independent rect. 21 5
474 72.72 temperature 30.0 90 < th dose independent rect. 21 5
475 72.72 humidity 50.0 90 > th dose independent rect. 21 5
478 72.72 atmosphere 995.0 90 > th dose independent rect. 21 5
479 72.72 radiation 1.0 90 < th dose independent rect. 21 5
486 72.72 temperature 10.0 90 > th dose independent rect. 2 19
487 72.72 atmosphere 1015.0 90 < th dose independent rect. 2 19
488 72.72 radiation 1.0 90 < th dose dependent rect. 21 5
498 72.75 wind 9.0 90 < th dose independent rect. 21 5
505 72.79 humidity 50.0 270 > th dose dependent rect. 1 4
541 72.94 radiation 1.0 270 < th dose independent rect. 1 16
549 72.99 precipitation 0.1 270 < th dose independent rect. 1 18
552 72.99 precipitation 0.1 270 < th dose dependent rect. 1 18
556 73.01 wind 9.0 270 < th dose independent rect. 24 21
559 73.02 atmosphere 1015.0 270 < th dose independent rect. 19 6
570 73.05 wind 9.0 270 < th dose independent rect. 4 22
573 73.08 precipitation 0.1 270 < th dose independent rect. 19 6
578 73.08 precipitation 0.1 270 < th dose dependent rect. 19 6
590 73.12 radiation 40.0 90 < th dose dependent rect. 2 9
598 73.17 precipitation 0.1 10 < th dose independent rect. 2 6
601 73.17 precipitation 0.1 10 < th dose dependent rect. 2 6
603 73.18 atmosphere 1010.0 10 < th dose independent rect. 2 6
619 73.28 temperature 10.0 270 > th dose independent rect. 2 2
621 73.28 temperature 30.0 270 < th dose independent rect. 2 2
622 73.28 humidity 50.0 270 > th dose independent rect. 2 2
625 73.28 atmosphere 995.0 270 > th dose independent rect. 2 2
626 73.28 atmosphere 1010.0 270 < th dose independent rect. 2 2
628 73.28 radiation 1.0 270 < th dose independent rect. 2 2
633 73.28 radiation 40.0 90 < th dose independent rect. 2 19
634 73.28 temperature 10.0 270 > th dose independent rect. 4 22
635 73.28 radiation 1.0 270 < th dose dependent rect. 2 2
642 73.29 humidity 60.0 14400 > th dose independent rect. 3 4
649 73.31 wind 9.0 90 < th dose independent rect. 2 19
651 73.32 humidity 60.0 90 > th dose dependent rect. 2 9
668 73.38 temperature 30.0 90 < th dose dependent rect. 2 19
706 73.43 atmosphere 1015.0 270 < th dose independent rect. 24 20
713 73.45 humidity 60.0 270 > th dose independent rect. 19 6
715 73.46 temperature 10.0 270 > th dose independent rect. 19 6
716 73.46 temperature 30.0 270 < th dose independent rect. 19 6
718 73.46 atmosphere 995.0 270 > th dose independent rect. 19 6
719 73.46 radiation 1.0 270 < th dose independent rect. 19 6
727 73.46 radiation 1.0 270 < th dose dependent rect. 19 6
733 73.49 wind 9.0 270 < th dose independent rect. 19 6
735 73.49 precipitation 0.1 10 < th dose independent rect. 2 19
737 73.49 precipitation 0.1 10 < th dose dependent rect. 2 19
741 73.53 radiation 20.0 14400 < th dose dependent rect. 24 3
752 73.57 wind 5.0 10 < th dose dependent rect. 3 3
758 73.58 wind 9.0 270 < th dose dependent rect. 21 3
805 73.67 radiation 30.0 10 < th dose independent rect. 2 6
808 73.68 wind 9.0 14400 < th dose independent rect. 23 4
812 73.68 temperature 30.0 90 < th dose dependent rect. 2 17
816 73.69 atmosphere 1015.0 270 < th dose dependent rect. 1 4
848 73.71 humidity 70.0 4320 > th dose independent rect. 22 5
865 73.71 temperature 15.0 10 > th dose dependent rect. 23 13
866 73.71 wind 9.0 90 < th dose dependent rect. 7 19
878 73.73 wind 5.0 10 < th dose independent rect. 2 6
885 73.76 wind 1.0 270 > th dose independent rect. 1 3
887 73.76 atmosphere 1015.0 270 < th dose independent rect. 5 20
901 73.81 wind 9.0 10 < th dose independent rect. 8 18
905 73.82 humidity 50.0 270 > th dose dependent rect. 2 2
921 73.86 atmosphere 995.0 90 > th dose independent rect. 2 19
927 73.87 precipitation 0.1 10 < th dose independent rect. 8 18
930 73.87 precipitation 0.1 10 < th dose dependent rect. 8 18
940 73.90 humidity 70.0 10 > th dose independent rect. 2 6
971 73.98 temperature 30.0 270 < th dose dependent rect. 1 4
995 74.04 atmosphere 1015.0 270 < th dose independent rect. 6 18