Os08g0490000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os08g0490000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.09 | 0.418 | 9.25 | -0.199 | 0.775 | 4.06 | 0.238 | 8.71 | 0.126 | 4.75 | 7.194 | 360 | -- | -- |
| 86.05 | 0.432 | 9.2 | -0.107 | 0.782 | 2.91 | 0.453 | -- | 0.1 | 4.21 | 7.449 | 402 | -- | -- |
| 79.18 | 0.414 | 9.25 | -0.202 | 0.794 | 3.91 | -- | 8.24 | 0.119 | 4.84 | 6.945 | 359 | -- | -- |
| 81.36 | 0.42 | 9.21 | -0.349 | 0.803 | 2.44 | -- | -- | 0.148 | 4.63 | 8.642 | 451 | -- | -- |
| 107.35 | 0.483 | 9.26 | -0.209 | -- | 3.83 | -- | 9.46 | 0.141 | -- | 8.086 | 570 | -- | -- |
| 95.65 | 0.459 | 9.22 | -0.486 | 0.668 | -- | 0.512 | -- | 0.0754 | 4.52 | -- | -- | -- | -- |
| 96.35 | 0.46 | 9.22 | -0.489 | 0.672 | -- | -- | -- | 0.0727 | 4.57 | -- | -- | -- | -- |
| 107.52 | 0.483 | 9.21 | -0.322 | -- | 1.7 | -- | -- | 0.151 | -- | 8.706 | 692 | -- | -- |
| 83.47 | 0.426 | 9.19 | -- | 0.735 | 2.24 | -- | -- | 0.18 | 4.85 | 7.94 | 500 | -- | -- |
| 120.44 | 0.513 | 9.22 | -0.463 | -- | -- | -- | -- | 0.0904 | -- | -- | -- | -- | -- |
| 102.66 | 0.474 | 9.21 | -- | 0.663 | -- | -- | -- | 0.127 | 4.59 | -- | -- | -- | -- |
| 109.94 | 0.488 | 9.2 | -- | -- | 1.78 | -- | -- | 0.191 | -- | 8.799 | 751 | -- | -- |
| 126.11 | 0.524 | 9.21 | -- | -- | -- | -- | -- | 0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.56 | wind | 9 | 270 | > th | dose dependent | sin | 10 | NA |
| 2 | 79.00 | wind | 9 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 3 | 79.01 | wind | 7 | 270 | > th | dose dependent | sin | 16 | NA |
| 4 | 79.03 | wind | 9 | 720 | > th | dose dependent | rect. | 10 | 6 |
| 9 | 79.10 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 12 | 79.10 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 36 | 79.20 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 43 | 79.29 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 13 |
| 45 | 79.34 | wind | 9 | 270 | < th | dose independent | sin | 10 | NA |
| 53 | 79.38 | wind | 9 | 720 | > th | dose independent | rect. | 21 | 19 |
| 59 | 79.45 | wind | 9 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 62 | 79.51 | wind | 9 | 720 | > th | dose independent | rect. | 10 | 6 |
| 63 | 79.53 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 15 |
| 67 | 79.54 | wind | 9 | 270 | > th | dose independent | sin | 10 | NA |
| 69 | 79.55 | wind | 9 | 720 | > th | dose dependent | sin | 3 | NA |
| 102 | 79.69 | wind | 9 | 720 | < th | dose independent | sin | 0 | NA |
| 105 | 79.72 | wind | 9 | 720 | > th | dose independent | sin | 4 | NA |
| 109 | 79.74 | wind | 9 | 720 | < th | dose independent | sin | 3 | NA |
| 138 | 80.13 | wind | 7 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 174 | 80.27 | wind | 7 | 270 | > th | dose dependent | no | NA | NA |
| 179 | 80.27 | wind | 7 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 201 | 80.35 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 254 | 80.52 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 2 |
| 318 | 80.89 | wind | 9 | 30 | > th | dose independent | sin | 14 | NA |
| 353 | 81.01 | wind | 7 | 270 | > th | dose independent | rect. | 11 | 23 |
| 364 | 81.10 | wind | 9 | 270 | > th | dose independent | sin | 15 | NA |
| 367 | 81.11 | wind | 9 | 720 | < th | dose independent | no | NA | NA |
| 580 | 81.32 | wind | 7 | 270 | > th | dose independent | rect. | 11 | 15 |
| 644 | 81.38 | wind | 9 | 720 | > th | dose independent | no | NA | NA |
| 675 | 81.38 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 23 |