BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0490000 Os08g0490000|AK100183
         (508 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0490000  Basic helix-loop-helix dimerisation region bHL...   845   0.0  
Os09g0475400  Basic helix-loop-helix dimerisation region bHL...   432   e-121
Os02g0726700  Basic helix-loop-helix dimerisation region bHL...   161   1e-39

>Os08g0490000 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 508

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/508 (83%), Positives = 426/508 (83%)

Query: 1   MGLQGNKATHDFLSLYAAAATATDYSPLPRHPDSKXXXXXXXXXQDFFLKTHDFLPQVEK 60
           MGLQGNKATHDFLSLYAAAATATDYSPLPRHPDSK         QDFFLKTHDFLPQVEK
Sbjct: 1   MGLQGNKATHDFLSLYAAAATATDYSPLPRHPDSKPSAPAPPPAQDFFLKTHDFLPQVEK 60

Query: 61  RADQTXXXXXXXXXHAAVTAEKXXXXXXXXXXXGAFTINHXXXXXXXXXKQEPPFAPWCQ 120
           RADQT         HAAVTAEK           GAFTINH         KQEPPFAPWCQ
Sbjct: 61  RADQTPPPPPPPPPHAAVTAEKQLLHQHALAAAGAFTINHAVAAAATAVKQEPPFAPWCQ 120

Query: 121 PVAAVDPRGHQWSLPFXXXXXXXXXXXXXXXXXXXXXXERKGGGGFMXXXXXXXXXXXXX 180
           PVAAVDPRGHQWSLPF                      ERKGGGGFM             
Sbjct: 121 PVAAVDPRGHQWSLPFAARAVAVASSRPQQQQQQPPPPERKGGGGFMDAGSRSSGGAGFD 180

Query: 181 XXXXXXXXXEVSSSLKELTVRVEGKGGSCSGSAGTDQMPNTPRSKHSATEQRRRSKINDR 240
                    EVSSSLKELTVRVEGKGGSCSGSAGTDQMPNTPRSKHSATEQRRRSKINDR
Sbjct: 181 DDDGHAARREVSSSLKELTVRVEGKGGSCSGSAGTDQMPNTPRSKHSATEQRRRSKINDR 240

Query: 241 FQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYEVSYPEWNQENAKVVPWTNIYF 300
           FQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYEVSYPEWNQENAKVVPWTNIYF
Sbjct: 241 FQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYEVSYPEWNQENAKVVPWTNIYF 300

Query: 301 RSSWKNAQNKGQVPADHSPDPPELLKNGSPYMFPFTGNSDNNNAVETAAASGAQDQAETD 360
           RSSWKNAQNKGQVPADHSPDPPELLKNGSPYMFPFTGNSDNNNAVETAAASGAQDQAETD
Sbjct: 301 RSSWKNAQNKGQVPADHSPDPPELLKNGSPYMFPFTGNSDNNNAVETAAASGAQDQAETD 360

Query: 361 PMSRVSYRSVDTPSPNNVADKVTSQPHAQLVRPSPAENHTVNCDKLNNSDLAIDEGTISL 420
           PMSRVSYRSVDTPSPNNVADKVTSQPHAQLVRPSPAENHTVNCDKLNNSDLAIDEGTISL
Sbjct: 361 PMSRVSYRSVDTPSPNNVADKVTSQPHAQLVRPSPAENHTVNCDKLNNSDLAIDEGTISL 420

Query: 421 SSQYSQELLNKLNHALENSGIDLSQASISVQINLGKRAMKRSTPAATSTSKELTDPASNS 480
           SSQYSQELLNKLNHALENSGIDLSQASISVQINLGKRAMKRSTPAATSTSKELTDPASNS
Sbjct: 421 SSQYSQELLNKLNHALENSGIDLSQASISVQINLGKRAMKRSTPAATSTSKELTDPASNS 480

Query: 481 QAMGRQLRLGDGAEEHRQASKRHKSDNS 508
           QAMGRQLRLGDGAEEHRQASKRHKSDNS
Sbjct: 481 QAMGRQLRLGDGAEEHRQASKRHKSDNS 508



>Os09g0475400 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 504

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 271/527 (51%), Positives = 321/527 (60%), Gaps = 42/527 (7%)

Query: 1   MGLQGNKAT---HDFLSLYAAAATATDYSPLPRHPDSKXXXXXXXXXQDFFLKTHDFLPQ 57
           MG+QGNKAT   HDFLSLY  AA      P  +  D+K         Q FFL+THDFL  
Sbjct: 1   MGIQGNKATTREHDFLSLYTTAAK----DPSLQLHDAKPPPPS----QGFFLRTHDFLQP 52

Query: 58  VEKRADQTXXXXXXXXXHAAVTAEKXXXXXXXXXXXGAFTINHXXXX---XXXXXKQEP- 113
           +EK                   A             G F+I+H            K EP 
Sbjct: 53  LEKPTPAPTPPPTSQLQQQQQQA--------FPGGIGTFSISHVAGARPVAAAVVKAEPT 104

Query: 114 PFAPWCQPVA----------AVDPRGHQWSLPFXXXXXXXXXXXXXXXXXXXXXXERKGG 163
           PF  W QP A                HQW+LPF                       R GG
Sbjct: 105 PFVLWGQPAAAAAAHPVAALGHHHHHHQWTLPFAGVGQVAATAARQQQEWKG----RVGG 160

Query: 164 GGFMXXXXXXXXXXXXXXXXXXXXXXEVSSSLKELTVRVEGKGGSCSGSAGTDQMPNTPR 223
           GGFM                      EVSSSLKELTVRV+GKGGSCSGS  TDQ P++PR
Sbjct: 161 GGFMDSGSRSSGGAGFDDDDGVAARREVSSSLKELTVRVDGKGGSCSGSG-TDQRPSSPR 219

Query: 224 SKHSATEQRRRSKINDRFQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYEVSYP 283
           SKHSATEQRRRSKINDRFQ+LR+LLPH+DQKRDKA+FLLEVIEYIRFLQEKVQK+E S P
Sbjct: 220 SKHSATEQRRRSKINDRFQILRELLPHSDQKRDKATFLLEVIEYIRFLQEKVQKFEASVP 279

Query: 284 EWNQENAKVVPWTNIYFRSSWKNAQNKGQVPADHSPDPPELLKNGSPYMFPFTGN-SDNN 342
           EWNQENAK++PW+NIYFRS WKN+Q+KGQ P D  PDP + ++NGS   + FTG   DN+
Sbjct: 280 EWNQENAKILPWSNIYFRSFWKNSQSKGQNPGDDLPDPSQFIRNGSSSGYNFTGKPDDNH 339

Query: 343 NAVETAAASGAQDQAETDPMSRVSYRSVDTPSPNNVADKVTSQPHAQLVRPSPAENHTVN 402
           N V +AAASGAQ+  ETD  + VSYRS +TP+  N+ + VTSQ  AQ   P+  ++  +N
Sbjct: 340 NMVTSAAASGAQELVETDHAASVSYRSAETPT--NITNNVTSQAQAQWASPAGVDDCAMN 397

Query: 403 CDKLNNSDLAIDEGTISLSSQYSQELLNKLNHALENSGIDLSQASISVQINLGKRAMKRS 462
            + LNN  LAIDEGTISLSSQYSQ+LL  L HALE+SG+DLSQ+SISVQINLGKRA+KR 
Sbjct: 398 SEMLNNQQLAIDEGTISLSSQYSQQLLGTLTHALESSGVDLSQSSISVQINLGKRAVKRP 457

Query: 463 TPAATSTSKELTDPASNSQAMGRQL-RLGDGAEEHRQASKRHKSDNS 508
               +S+SKEL   ++N++ MG QL  LG G EE    +KRHKS NS
Sbjct: 458 GADGSSSSKELPSTSANNENMGHQLTMLGGGTEELPHPTKRHKSGNS 504



>Os02g0726700 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 344

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 90/114 (78%), Gaps = 4/114 (3%)

Query: 200 VRVEGKGGSCSGSAGTDQMPNTPRSKHSATEQRRRSKINDRFQLLRDLLPHNDQKRDKAS 259
            R EG+    S ++  DQ P+TPRSKHSATEQRRR+KINDR ++LR+LLPH DQKRDKAS
Sbjct: 128 TRAEGR----SSASSADQGPSTPRSKHSATEQRRRTKINDRLEILRELLPHTDQKRDKAS 183

Query: 260 FLLEVIEYIRFLQEKVQKYEVSYPEWNQENAKVVPWTNIYFRSSWKNAQNKGQV 313
           FL EVIEYIRFLQEKVQKYE + PE N E++K +PW  +Y+RS W+N +N  QV
Sbjct: 184 FLSEVIEYIRFLQEKVQKYEEADPERNHEDSKSMPWAKVYYRSCWRNTKNTSQV 237



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.126    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,385,724
Number of extensions: 581564
Number of successful extensions: 1709
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1725
Number of HSP's successfully gapped: 3
Length of query: 508
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 403
Effective length of database: 11,553,331
Effective search space: 4655992393
Effective search space used: 4655992393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)