BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0473300 Os09g0473300|AK058514
(463 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0473300 Conserved hypothetical protein 960 0.0
Os08g0485700 Methyl-CpG binding domain containing protein 119 4e-27
Os08g0485600 Methyl-CpG binding domain containing protein 72 8e-13
>Os09g0473300 Conserved hypothetical protein
Length = 463
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/463 (100%), Positives = 463/463 (100%)
Query: 1 MEVDNDNVECKYGNAGDSTSPENGKHIEDQIIDCRMTALKDHEINTDVRIRDVNLNSCLD 60
MEVDNDNVECKYGNAGDSTSPENGKHIEDQIIDCRMTALKDHEINTDVRIRDVNLNSCLD
Sbjct: 1 MEVDNDNVECKYGNAGDSTSPENGKHIEDQIIDCRMTALKDHEINTDVRIRDVNLNSCLD 60
Query: 61 AMSPPVSGANYETSNAIDDNNRSSIIAQCFGANSADDNACKEENFVNNQSSVSKAESFNQ 120
AMSPPVSGANYETSNAIDDNNRSSIIAQCFGANSADDNACKEENFVNNQSSVSKAESFNQ
Sbjct: 61 AMSPPVSGANYETSNAIDDNNRSSIIAQCFGANSADDNACKEENFVNNQSSVSKAESFNQ 120
Query: 121 NNDMIYQPNLTMDPISPAQINVDCFTSCSMTSEIKNNSNRREDNAKEQLVNPRNITSNDA 180
NNDMIYQPNLTMDPISPAQINVDCFTSCSMTSEIKNNSNRREDNAKEQLVNPRNITSNDA
Sbjct: 121 NNDMIYQPNLTMDPISPAQINVDCFTSCSMTSEIKNNSNRREDNAKEQLVNPRNITSNDA 180
Query: 181 GFDVEAYSNIFNGAITESSLAQLNNAINMKADYSSCYSLSDLNTLTGGPATDEIDIHSMR 240
GFDVEAYSNIFNGAITESSLAQLNNAINMKADYSSCYSLSDLNTLTGGPATDEIDIHSMR
Sbjct: 181 GFDVEAYSNIFNGAITESSLAQLNNAINMKADYSSCYSLSDLNTLTGGPATDEIDIHSMR 240
Query: 241 NSFVNSSTSRNEPNEHCTLDFDIKGSMLEALEKSDSDLENQYNGSTRPCGSLPTAGTSGS 300
NSFVNSSTSRNEPNEHCTLDFDIKGSMLEALEKSDSDLENQYNGSTRPCGSLPTAGTSGS
Sbjct: 241 NSFVNSSTSRNEPNEHCTLDFDIKGSMLEALEKSDSDLENQYNGSTRPCGSLPTAGTSGS 300
Query: 301 IDDFMSLQTNFGSLTSLVRSVEDGPMSRIIQDQCDLQLGFGVQKPQMYPTFEEQLRMASA 360
IDDFMSLQTNFGSLTSLVRSVEDGPMSRIIQDQCDLQLGFGVQKPQMYPTFEEQLRMASA
Sbjct: 301 IDDFMSLQTNFGSLTSLVRSVEDGPMSRIIQDQCDLQLGFGVQKPQMYPTFEEQLRMASA 360
Query: 361 GAPQFGTMNRHNHVPVPEPTLMLGYAPHIGSCPPVQLGWDMSMSKMVGGCVLQSSMCVWC 420
GAPQFGTMNRHNHVPVPEPTLMLGYAPHIGSCPPVQLGWDMSMSKMVGGCVLQSSMCVWC
Sbjct: 361 GAPQFGTMNRHNHVPVPEPTLMLGYAPHIGSCPPVQLGWDMSMSKMVGGCVLQSSMCVWC 420
Query: 421 NTQFQHFGTVADQQADSLGFICPACKEKISGHLSMLNNSSSQL 463
NTQFQHFGTVADQQADSLGFICPACKEKISGHLSMLNNSSSQL
Sbjct: 421 NTQFQHFGTVADQQADSLGFICPACKEKISGHLSMLNNSSSQL 463
>Os08g0485700 Methyl-CpG binding domain containing protein
Length = 885
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 95/196 (48%), Gaps = 69/196 (35%)
Query: 334 CDLQLGFGVQKPQMYPTFEEQLRMASAGAP------------------QFGTMNRHNHVP 375
CDLQLGF QK Q+ P + E LR A++G+P QFG+M R + +P
Sbjct: 691 CDLQLGFSGQKQQILPGYGE-LRPAASGSPQLGGMAANSSIPTRPSQPQFGSMARTDALP 749
Query: 376 -----------------------------VP--------------------EPTLMLGYA 386
VP EPTL+LGY
Sbjct: 750 TGPSQPGSLARPNFVPTGFSQFASRPPTSVPPADSSQFAGGMARQNIPTTSEPTLVLGYT 809
Query: 387 PHIGSCPPVQLGWDMSMSKMVGGCVLQSSMCVWCNTQFQHFGTVADQQADSLGFICPACK 446
P + + PP QLGWD+S+S+MV +L +C+WCN+QF HFG + QQ+ S GFICPACK
Sbjct: 810 PQMVNGPPAQLGWDLSLSRMVSEGML-PVLCIWCNSQFHHFGPIDAQQSGSFGFICPACK 868
Query: 447 EKISGHLSMLNNSSSQ 462
EK+SG+ + NN Q
Sbjct: 869 EKMSGNPNAPNNGPWQ 884
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 30/147 (20%)
Query: 26 HIEDQIIDCRMTALKDHEINTDVRIRDVNLNSCLDAMSPPVSGANYETSNAIDDNNRSSI 85
H + QIID + A K E+N ++ RDVNLNS L+ +S P++ AN ETS A++D NRS I
Sbjct: 549 HCQGQIIDHAVAASKHAEVNNSMKSRDVNLNSRLNTISFPIATANNETSTALNDVNRSCI 608
Query: 86 IAQCF--------GANS------------------ADDNACKEENF---VNNQSSVSKAE 116
+ F GA S AD ++ +F N++ S+A
Sbjct: 609 TGKGFSGSFSNNDGAASIVLPSSGLNNKIPSSLGVADRSSIAARSFNAGYVNENGASEAN 668
Query: 117 SF-NQNNDMIYQPNLTMDPISPAQINV 142
+ N+NN M+YQ +L M P+SP + +
Sbjct: 669 NIGNKNNTMVYQTSLAMRPVSPCDLQL 695
>Os08g0485600 Methyl-CpG binding domain containing protein
Length = 728
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 30/144 (20%)
Query: 26 HIEDQIIDCRMTALKDHEINTDVRIRDVNLNSCLDAMSPPVSGANYETSNAIDDNNRSSI 85
H + QIID + A K E+N ++ RDVNLNS L+ +S P++ AN ETS A++D NRS I
Sbjct: 543 HCQGQIIDHAVAASKHAEVNNSMKSRDVNLNSRLNTISFPIATANNETSTALNDVNRSCI 602
Query: 86 IAQCF-GANSADDNACK---EENFVNNQSSVS---------KAESF-------------- 118
+ F G+ S +D A + +NN+ S S A SF
Sbjct: 603 TGKGFSGSFSNNDGAASIVLPSSGLNNKISSSLGVADRSSIAARSFNAGYVYENGASEAN 662
Query: 119 ---NQNNDMIYQPNLTMDPISPAQ 139
N+NN M+YQ +L M P+SP +
Sbjct: 663 NIGNKNNTMVYQTSLAMRPLSPGK 686
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,753,157
Number of extensions: 649915
Number of successful extensions: 1358
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1351
Number of HSP's successfully gapped: 4
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)