Os09g0473300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0473300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.97 | 0.358 | 6.94 | 1.22 | 0.415 | 1.12 | -0.339 | 1.26 | 0.321 | 6.23 | 15.2 | 28 | -- | -- |
| 59.19 | 0.358 | 6.97 | 1.05 | 0.418 | 1.07 | -0.487 | -- | 0.272 | 5.98 | 17.2 | 26 | -- | -- |
| 58.24 | 0.355 | 6.94 | 1.23 | 0.418 | 1.14 | -- | 1.36 | 0.323 | 6.18 | 15.2 | 27 | -- | -- |
| 59.76 | 0.36 | 6.97 | 1.04 | 0.415 | 1.07 | -- | -- | 0.27 | 6.12 | 17.31 | 26 | -- | -- |
| 65.9 | 0.38 | 6.94 | 1.27 | -- | 0.909 | -- | 1.25 | 0.361 | -- | 15.2 | 27 | -- | -- |
| 73.49 | 0.402 | 6.93 | 1.27 | 0.351 | -- | 0.0452 | -- | 0.44 | 9.75 | -- | -- | -- | -- |
| 73.5 | 0.401 | 6.93 | 1.27 | 0.352 | -- | -- | -- | 0.44 | 9.7 | -- | -- | -- | -- |
| 67.29 | 0.384 | 6.97 | 1.1 | -- | 0.851 | -- | -- | 0.312 | -- | 17.18 | 23 | -- | -- |
| 85.17 | 0.43 | 7 | -- | 0.57 | 1.68 | -- | -- | 0.102 | 5.74 | 6.369 | 101 | -- | -- |
| 80.84 | 0.42 | 6.94 | 1.27 | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
| 116.15 | 0.504 | 6.96 | -- | 0.35 | -- | -- | -- | 0.298 | 9.43 | -- | -- | -- | -- |
| 97 | 0.459 | 7 | -- | -- | 1.27 | -- | -- | 0.15 | -- | 15.2 | 12 | -- | -- |
| 123.32 | 0.518 | 6.97 | -- | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 10 | 56.80 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 35 | 57.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 43 | 57.68 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 54 | 57.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 65 | 57.98 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 94 | 58.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 175 | 58.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 193 | 58.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 198 | 58.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 220 | 58.80 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 225 | 58.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 229 | 58.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 234 | 58.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 245 | 58.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 258 | 58.97 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 283 | 59.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 288 | 59.08 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 312 | 59.15 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 322 | 59.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 341 | 59.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 380 | 59.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 560 | 59.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 595 | 59.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 639 | 59.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 694 | 59.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 775 | 59.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 847 | 59.97 | temperature | 25 | 720 | > th | dose independent | sin | 6 | NA |
| 916 | 60.03 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |