Os08g0485700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Methyl-CpG binding domain containing protein.
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Os08g0485700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Methyl-CpG binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.65 | 0.284 | 9.47 | 1.62 | 0.121 | -0.692 | 0.618 | 0.62 | 0.39 | 18.3 | 78 | 1332 | -- | -- |
| 36.98 | 0.283 | 9.48 | 1.57 | 0.119 | -0.657 | 0.598 | -- | 0.378 | 18.4 | 78.02 | 1333 | -- | -- |
| 37.57 | 0.285 | 9.47 | 1.61 | 0.125 | -0.701 | -- | 0.564 | 0.391 | 17.9 | 78 | 1349 | -- | -- |
| 37.84 | 0.287 | 9.48 | 1.56 | 0.123 | -0.668 | -- | -- | 0.381 | 17.9 | 78.34 | 1350 | -- | -- |
| 38.36 | 0.288 | 9.47 | 1.61 | -- | -0.721 | -- | 0.542 | 0.391 | -- | 78.08 | 1334 | -- | -- |
| 42.41 | 0.305 | 9.49 | 1.53 | 0.161 | -- | 0.636 | -- | 0.346 | 17.7 | -- | -- | -- | -- |
| 43.37 | 0.308 | 9.48 | 1.53 | 0.165 | -- | -- | -- | 0.349 | 17.2 | -- | -- | -- | -- |
| 38.62 | 0.289 | 9.47 | 1.56 | -- | -0.69 | -- | -- | 0.379 | -- | 78.18 | 1333 | -- | -- |
| 98.87 | 0.463 | 9.51 | -- | 0.281 | -0.684 | -- | -- | 0.239 | 17.2 | 82.01 | 1788 | -- | -- |
| 44.8 | 0.313 | 9.48 | 1.52 | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
| 104.9 | 0.479 | 9.52 | -- | 0.14 | -- | -- | -- | 0.179 | 17.6 | -- | -- | -- | -- |
| 99.98 | 0.466 | 9.52 | -- | -- | -0.664 | -- | -- | 0.217 | -- | 81 | 1351 | -- | -- |
| 105.92 | 0.48 | 9.52 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.60 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 4 | 35.31 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 6 | 35.45 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 7 | 35.54 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 11 | 35.62 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 18 | 35.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 19 | 35.70 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 20 | 35.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 26 | 35.76 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 36 | 35.82 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 92 | 36.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 150 | 36.27 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 17 |
| 152 | 36.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 179 | 36.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 181 | 36.35 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 194 | 36.38 | humidity | 70 | 720 | > th | dose dependent | sin | 15 | NA |
| 212 | 36.43 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 16 |
| 263 | 36.50 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 269 | 36.51 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 273 | 36.51 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 291 | 36.54 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 14 |
| 300 | 36.56 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 314 | 36.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 340 | 36.58 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 453 | 36.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 21 |
| 475 | 36.71 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 499 | 36.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 535 | 36.78 | humidity | 80 | 720 | > th | dose independent | sin | 16 | NA |
| 612 | 36.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 680 | 36.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 701 | 36.96 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 706 | 36.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 722 | 36.99 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 727 | 37.00 | radiation | 10 | 1440 | > th | dose independent | sin | 18 | NA |
| 787 | 37.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 832 | 37.08 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 837 | 37.09 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 845 | 37.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 854 | 37.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 859 | 37.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 865 | 37.11 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 891 | 37.13 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 898 | 37.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 901 | 37.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 957 | 37.17 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 17 |
| 970 | 37.18 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 990 | 37.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |