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Os08g0485600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Methyl-CpG binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.23 (0.0133) R2 : 0.0563
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.146 (0.0279) R2dN8 : 0.0727 R2N8 : 0.0563
σ : 0.25
deviance : 28.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.98 0.182 9.21 0.53 0.248 -0.612 -0.0756 -0.755 0.173 6.78 21.29 106 -- --
15.4 0.184 9.21 0.502 0.238 -0.408 -0.0888 -- 0.169 6.85 21.29 106 -- --
14.97 0.18 9.2 0.528 0.253 -0.646 -- -0.839 0.174 6.86 21.23 147 -- --
15.41 0.184 9.21 0.501 0.237 -0.399 -- -- 0.169 6.96 21.4 91 -- --
18.04 0.199 9.21 0.539 -- -0.542 -- -0.591 0.179 -- 21.23 147 -- --
16.85 0.192 9.21 0.571 0.24 -- -0.0416 -- 0.206 7.58 -- -- -- --
16.86 0.192 9.21 0.57 0.24 -- -- -- 0.206 7.63 -- -- -- --
18.35 0.2 9.22 0.506 -- -0.407 -- -- 0.173 -- 21.4 7 -- --
21.23 0.215 9.23 -- 0.252 -0.691 -- -- 0.0992 6.78 21.3 207 -- --
19.95 0.209 9.21 0.574 -- -- -- -- 0.209 -- -- -- -- --
25.43 0.236 9.22 -- 0.245 -- -- -- 0.142 7.47 -- -- -- --
23.75 0.227 9.24 -- -- -0.712 -- -- 0.0761 -- 21.47 1500 -- --
28.64 0.25 9.23 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.84 temperature 20 270 < th dose dependent rect. 7 21
2 14.86 atmosphere 1000 270 > th dose dependent rect. 22 9
9 14.96 temperature 20 270 < th dose independent rect. 7 21
11 14.97 temperature 20 10 > th dose independent rect. 7 23
19 15.01 temperature 20 720 < th dose independent rect. 8 13
20 15.01 temperature 20 720 < th dose independent rect. 8 15
25 15.04 atmosphere 1010 720 < th dose dependent rect. 21 2
26 15.04 temperature 20 720 < th dose dependent rect. 8 15
33 15.06 temperature 20 720 < th dose independent sin 20 NA
34 15.06 atmosphere 1010 720 < th dose dependent rect. 20 4
38 15.07 temperature 20 90 > th dose independent rect. 18 23
48 15.08 atmosphere 1000 30 > th dose dependent rect. 17 14
58 15.10 temperature 20 720 > th dose independent rect. 7 16
62 15.10 atmosphere 1010 90 < th dose dependent rect. 21 12
74 15.12 atmosphere 1015 90 < th dose dependent rect. 21 14
82 15.13 temperature 20 10 > th dose independent rect. 3 23
84 15.13 atmosphere 1015 10 < th dose dependent sin 9 NA
86 15.13 temperature 20 270 < th dose dependent rect. 15 13
95 15.14 temperature 20 270 < th dose dependent rect. 17 11
116 15.16 temperature 20 270 > th dose independent rect. 3 23
122 15.16 temperature 20 90 < th dose dependent rect. 23 23
126 15.17 atmosphere 995 10 > th dose dependent sin 9 NA
128 15.17 atmosphere 1000 10 > th dose dependent rect. 24 8
133 15.18 temperature 20 270 < th dose independent rect. 15 13
147 15.19 temperature 20 270 < th dose independent rect. 17 11
153 15.19 atmosphere 1010 10 < th dose dependent rect. 21 12
163 15.20 temperature 20 90 > th dose independent rect. 21 14
167 15.20 temperature 20 90 < th dose dependent no NA NA
172 15.20 atmosphere 1000 90 > th dose dependent rect. 19 12
177 15.20 temperature 20 90 < th dose dependent rect. 15 21
178 15.20 temperature 20 90 < th dose dependent rect. 10 22
186 15.20 temperature 20 90 < th dose dependent rect. 17 23
192 15.21 temperature 20 270 < th dose dependent sin 15 NA
197 15.21 atmosphere 995 720 > th dose dependent rect. 19 7
205 15.21 temperature 20 90 < th dose dependent rect. 18 18
220 15.21 temperature 20 90 < th dose dependent rect. 1 23
225 15.22 temperature 20 720 > th dose independent sin 21 NA
226 15.22 temperature 20 720 < th dose independent rect. 16 5
251 15.22 temperature 20 10 < th dose dependent rect. 1 23
252 15.22 temperature 20 90 < th dose dependent rect. 21 23
309 15.25 temperature 20 10 < th dose dependent no NA NA
320 15.25 atmosphere 1000 10 > th dose dependent rect. 14 17
324 15.25 temperature 20 10 < th dose dependent rect. 11 22
326 15.25 temperature 20 10 < th dose dependent rect. 15 22
329 15.25 temperature 20 10 < th dose dependent rect. 3 23
330 15.25 temperature 20 10 < th dose dependent rect. 9 23
339 15.25 temperature 20 10 < th dose dependent rect. 17 23
342 15.25 temperature 20 10 < th dose dependent rect. 19 23
345 15.26 atmosphere 995 14400 > th dose independent rect. 18 1
371 15.26 temperature 20 10 < th dose dependent rect. 16 20
384 15.26 temperature 20 10 < th dose dependent rect. 19 21
404 15.26 temperature 20 10 < th dose dependent rect. 5 23
407 15.26 temperature 20 10 < th dose dependent rect. 7 23
422 15.26 temperature 20 10 < th dose dependent rect. 21 23
425 15.26 temperature 20 10 < th dose dependent rect. 23 23
437 15.27 temperature 20 30 > th dose independent rect. 1 23
450 15.27 temperature 20 10 < th dose dependent rect. 19 17
540 15.29 temperature 20 270 < th dose independent sin 14 NA
544 15.29 atmosphere 1000 270 > th dose independent rect. 22 9
548 15.29 temperature 20 90 < th dose dependent sin 7 NA
604 15.31 temperature 20 720 > th dose independent rect. 16 8
612 15.31 temperature 20 270 > th dose independent rect. 18 15
649 15.32 temperature 20 90 > th dose independent no NA NA
654 15.32 temperature 20 270 > th dose independent rect. 15 23
677 15.32 atmosphere 1000 10 > th dose dependent rect. 12 19
707 15.33 atmosphere 1000 720 > th dose dependent rect. 19 4
728 15.33 temperature 20 90 < th dose dependent rect. 23 18
741 15.34 temperature 20 4320 > th dose independent rect. 20 1
745 15.34 temperature 20 30 > th dose independent rect. 7 17
762 15.34 temperature 20 90 < th dose dependent rect. 23 13
793 15.35 temperature 20 10 < th dose independent rect. 1 23
815 15.36 temperature 20 10 > th dose independent no NA NA
816 15.36 temperature 20 90 < th dose independent no NA NA
817 15.36 temperature 20 4320 < th dose independent rect. 20 1
831 15.36 temperature 20 10 < th dose independent rect. 11 21
832 15.36 temperature 20 90 < th dose independent rect. 15 21
838 15.36 temperature 20 10 < th dose independent rect. 15 22
840 15.36 temperature 20 90 < th dose independent rect. 17 22
842 15.36 temperature 20 90 < th dose independent rect. 1 23
843 15.36 temperature 20 10 < th dose independent rect. 7 23
882 15.37 temperature 20 10 < th dose independent no NA NA
889 15.37 temperature 20 90 < th dose independent rect. 18 18
890 15.37 temperature 20 10 < th dose independent rect. 19 18
914 15.37 temperature 20 10 < th dose independent rect. 3 23
920 15.37 temperature 20 10 < th dose independent rect. 21 23
921 15.37 temperature 20 10 < th dose independent rect. 23 23
922 15.37 temperature 20 90 < th dose independent rect. 23 23
975 15.38 temperature 20 10 < th dose independent rect. 5 23
982 15.38 temperature 20 90 < th dose independent rect. 21 23
987 15.38 temperature 20 720 < th dose dependent rect. 21 2