BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0485600 Os08g0485600|AK068243
(728 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0485600 Methyl-CpG binding domain containing protein 1415 0.0
Os08g0485700 Methyl-CpG binding domain containing protein 1174 0.0
Os09g0473300 Conserved hypothetical protein 72 2e-12
>Os08g0485600 Methyl-CpG binding domain containing protein
Length = 728
Score = 1415 bits (3664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/728 (93%), Positives = 682/728 (93%)
Query: 1 METEVFPVVDLRVLTQSDLDELAAASAHAVDPRSSCPDRAVFNESAGSRKQTFSRVRFVP 60
METEVFPVVDLRVLTQSDLDELAAASAHAVDPRSSCPDRAVFNESAGSRKQTFSRVRFVP
Sbjct: 1 METEVFPVVDLRVLTQSDLDELAAASAHAVDPRSSCPDRAVFNESAGSRKQTFSRVRFVP 60
Query: 61 XXXXXXXXXXXXXXXXXKLPRGNDKEDSFIAYHLRRLFAPDDPSLIENPSFPQTQTLARS 120
KLPRGNDKEDSFIAYHLRRLFAPDDPSLIENPSFPQTQTLARS
Sbjct: 61 AAAAAAAAASASAAAAAKLPRGNDKEDSFIAYHLRRLFAPDDPSLIENPSFPQTQTLARS 120
Query: 121 PSPDPDQLTTNSRGVSVDLVSLSRLADPYDAELGKRTARMTTEEELMGFISSLAGQWVNQ 180
PSPDPDQLTTNSRGVSVDLVSLSRLADPYDAELGKRTARMTTEEELMGFISSLAGQWVNQ
Sbjct: 121 PSPDPDQLTTNSRGVSVDLVSLSRLADPYDAELGKRTARMTTEEELMGFISSLAGQWVNQ 180
Query: 181 RMRRKLVDASFFGDHLPSGWRLQLGIERKDRKAWVNCFSYVSPKGQSFATCQEVSAYLMS 240
RMRRKLVDASFFGDHLPSGWRLQLGIERKDRKAWVNCFSYVSPKGQSFATCQEVSAYLMS
Sbjct: 181 RMRRKLVDASFFGDHLPSGWRLQLGIERKDRKAWVNCFSYVSPKGQSFATCQEVSAYLMS 240
Query: 241 LLGYPEFKTDNIEYGSTQQHGLCADDGVNVLGVQHQIGTSMDSQSNLPVASATFYSHSRD 300
LLGYPEFKTDNIEYGSTQQHGLCADDGVNVLGVQHQIGTSMDSQSNLPVASATFYSHSRD
Sbjct: 241 LLGYPEFKTDNIEYGSTQQHGLCADDGVNVLGVQHQIGTSMDSQSNLPVASATFYSHSRD 300
Query: 301 QDETVADDINSYECQQCNLTFHGQSAYAHHLITFHXXXXXXXXXXXXXXFGEPVIGKDGK 360
QDETVADDINSYECQQCNLTFHGQSAYAHHLITFH FGEPVIGKDGK
Sbjct: 301 QDETVADDINSYECQQCNLTFHGQSAYAHHLITFHKVSSKRRKSNKVSKFGEPVIGKDGK 360
Query: 361 FECPVCNKTFEEQSRYFGHIGSHAKYQGLTPEAFLQTFSGKVGNNSFAXXXXXXXXXXXX 420
FECPVCNKTFEEQSRYFGHIGSHAKYQGLTPEAFLQTFSGKVGNNSFA
Sbjct: 361 FECPVCNKTFEEQSRYFGHIGSHAKYQGLTPEAFLQTFSGKVGNNSFAGLSSSLQVLVGS 420
Query: 421 XXXNEKTTACEARSQHHDCSTKHGGNSTRGIDLFNSNHPANFNGHNQSWCRSDEIPPTTE 480
NEKTTACEARSQHHDCSTKHGGNSTRGIDLFNSNHPANFNGHNQSWCRSDEIPPTTE
Sbjct: 421 PQLNEKTTACEARSQHHDCSTKHGGNSTRGIDLFNSNHPANFNGHNQSWCRSDEIPPTTE 480
Query: 481 AQSTWTYRNNEMNCADRTVPRTVPQPNDHEDCRVSGFAEATNFNDQAGRHQGFRPFSFGT 540
AQSTWTYRNNEMNCADRTVPRTVPQPNDHEDCRVSGFAEATNFNDQAGRHQGFRPFSFGT
Sbjct: 481 AQSTWTYRNNEMNCADRTVPRTVPQPNDHEDCRVSGFAEATNFNDQAGRHQGFRPFSFGT 540
Query: 541 TNHCQGQIIDHAVAASKHAEVNNSMKSRDVNLNSRLNTISFPIATANNETSTALNDVNRS 600
TNHCQGQIIDHAVAASKHAEVNNSMKSRDVNLNSRLNTISFPIATANNETSTALNDVNRS
Sbjct: 541 TNHCQGQIIDHAVAASKHAEVNNSMKSRDVNLNSRLNTISFPIATANNETSTALNDVNRS 600
Query: 601 CITGKGFSGSFSNNDGAASIVLPSSGLNNKISSSLGVADRSSIAARSFNAGYVYENGASE 660
CITGKGFSGSFSNNDGAASIVLPSSGLNNKISSSLGVADRSSIAARSFNAGYVYENGASE
Sbjct: 601 CITGKGFSGSFSNNDGAASIVLPSSGLNNKISSSLGVADRSSIAARSFNAGYVYENGASE 660
Query: 661 ANNIGNKNNTMVYQTSLAMRPLSPGKQSSGVASRRTAAVVSERHGGQVVRHPRTASSVYM 720
ANNIGNKNNTMVYQTSLAMRPLSPGKQSSGVASRRTAAVVSERHGGQVVRHPRTASSVYM
Sbjct: 661 ANNIGNKNNTMVYQTSLAMRPLSPGKQSSGVASRRTAAVVSERHGGQVVRHPRTASSVYM 720
Query: 721 PEQGPGWL 728
PEQGPGWL
Sbjct: 721 PEQGPGWL 728
>Os08g0485700 Methyl-CpG binding domain containing protein
Length = 885
Score = 1174 bits (3036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/707 (83%), Positives = 607/707 (85%), Gaps = 18/707 (2%)
Query: 1 METEVFPVVDLRVLTQSDLDELAAASAHAVDPRSSCPD----------RAVFNESAGSRK 50
METEVFPVVDLRVL+QSDL+ LAAASAHAV P SCPD RAVFNESAGSRK
Sbjct: 1 METEVFPVVDLRVLSQSDLEALAAASAHAVAPGGSCPDADQLPPLKIDRAVFNESAGSRK 60
Query: 51 QTFSRVRFVPXXXXXXXXXXXXXXXXXKLPRGNDKEDSFIAYHLRRLFAPDDPSLIENPS 110
QTFSRVRF KLPRGNDKEDSFIAYHLRRLFAPDDPS
Sbjct: 61 QTFSRVRFGAAAAVAASPSSPSPSAAAKLPRGNDKEDSFIAYHLRRLFAPDDPSS----- 115
Query: 111 FPQTQTLA--RSPSPDPDQLTTNSRGVSVDLVSLSRLADPYDAELGKRTARMTTEEELMG 168
PQ QTLA PSPDPDQLTTNS+GVSVDLVSLSRLADPYDAELGKRTA MTTEEELMG
Sbjct: 116 -PQIQTLALPAPPSPDPDQLTTNSKGVSVDLVSLSRLADPYDAELGKRTAGMTTEEELMG 174
Query: 169 FISSLAGQWVNQRMRRKLVDASFFGDHLPSGWRLQLGIERKDRKAWVNCFSYVSPKGQSF 228
FISSLAGQWV+QRMRRKLVDASFFGDHLPSGWRLQLGI+RKDRKAWVNCFSYVSPKGQSF
Sbjct: 175 FISSLAGQWVSQRMRRKLVDASFFGDHLPSGWRLQLGIKRKDRKAWVNCFSYVSPKGQSF 234
Query: 229 ATCQEVSAYLMSLLGYPEFKTDNIEYGSTQQHGLCADDGVNVLGVQHQIGTSMDSQSNLP 288
ATCQEVSAYLMSLLGYPEFKTDNIEYGSTQQHGLCADDGVNVLGVQHQIGT MDSQS LP
Sbjct: 235 ATCQEVSAYLMSLLGYPEFKTDNIEYGSTQQHGLCADDGVNVLGVQHQIGTGMDSQSILP 294
Query: 289 VASATFYSHSRDQDETVADDINSYECQQCNLTFHGQSAYAHHLITFHXXXXXXXXXXXXX 348
VAS TF SHSRDQDET ADDINSYECQQCNLTFHGQSAYAHHLITFH
Sbjct: 295 VASITFSSHSRDQDETDADDINSYECQQCNLTFHGQSAYAHHLITFHKMGSKRRKINKVG 354
Query: 349 XFGEPVIGKDGKFECPVCNKTFEEQSRYFGHIGSHAKYQGLTPEAFLQTFSGKVGNNSFA 408
FGEPVIGKDGKFECPVCNKTFEEQSRYFGH+GSHAKY GLTPEAFLQT SGKVGN+SFA
Sbjct: 355 KFGEPVIGKDGKFECPVCNKTFEEQSRYFGHVGSHAKYHGLTPEAFLQTLSGKVGNDSFA 414
Query: 409 XXXXXXXXXXXXXXXNEKTTACEARSQHHDCSTKHGGNSTRGIDLFNSNHPANFNGHNQS 468
NEKTTA EARSQHH+CSTKHGGNSTRGIDLFNSN PANFNGHNQ+
Sbjct: 415 GLSCSLQDLVGSPQLNEKTTASEARSQHHNCSTKHGGNSTRGIDLFNSNCPANFNGHNQT 474
Query: 469 WCRSDEIPPTTEAQSTWTYRNNEMNCADRTVPRTVPQPNDHEDCRVSGFAEATNFNDQAG 528
WCR DEIPPTT+A STWTYRNN NCADRTVPRT PQPNDH DCRVSGFAEATNFNDQAG
Sbjct: 475 WCRPDEIPPTTDAPSTWTYRNNVTNCADRTVPRTAPQPNDHMDCRVSGFAEATNFNDQAG 534
Query: 529 RHQGFRPFSFGTTNHCQGQIIDHAVAASKHAEVNNSMKSRDVNLNSRLNTISFPIATANN 588
RHQGFRP SFGTTNHCQGQIIDHAVAASKHAEVNNSMKSRDVNLNSRLNTISFPIATANN
Sbjct: 535 RHQGFRPSSFGTTNHCQGQIIDHAVAASKHAEVNNSMKSRDVNLNSRLNTISFPIATANN 594
Query: 589 ETSTALNDVNRSCITGKGFSGSFSNNDGAASIVLPSSGLNNKISSSLGVADRSSIAARSF 648
ETSTALNDVNRSCITGKGFSGSFSNNDGAASIVLPSSGLNNKI SSLGVADRSSIAARSF
Sbjct: 595 ETSTALNDVNRSCITGKGFSGSFSNNDGAASIVLPSSGLNNKIPSSLGVADRSSIAARSF 654
Query: 649 NAGYVYENGASEANNIGNKNNTMVYQTSLAMRPLSPGKQSSGVASRR 695
NAGYV ENGASEANNIGNKNNTMVYQTSLAMRP+SP G + ++
Sbjct: 655 NAGYVNENGASEANNIGNKNNTMVYQTSLAMRPVSPCDLQLGFSGQK 701
>Os09g0473300 Conserved hypothetical protein
Length = 463
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 30/144 (20%)
Query: 543 HCQGQIIDHAVAASKHAEVNNSMKSRDVNLNSRLNTISFPIATANNETSTALNDVNRSCI 602
H + QIID + A K E+N ++ RDVNLNS L+ +S P++ AN ETS A++D NRS I
Sbjct: 26 HIEDQIIDCRMTALKDHEINTDVRIRDVNLNSCLDAMSPPVSGANYETSNAIDDNNRSSI 85
Query: 603 TGKGFSGSFSNNDGAASIVLPSSGLNNKISSSLGVADRSSIAARSFNAGYVYENGASEAN 662
+ F G+ S +D A + +NN+ S S A SF
Sbjct: 86 IAQCF-GANSADDNACK---EENFVNNQSSVS---------KAESF-------------- 118
Query: 663 NIGNKNNTMVYQTSLAMRPLSPGK 686
N+NN M+YQ +L M P+SP +
Sbjct: 119 ---NQNNDMIYQPNLTMDPISPAQ 139
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,423,927
Number of extensions: 1010631
Number of successful extensions: 2659
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 3
Length of query: 728
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 620
Effective length of database: 11,396,689
Effective search space: 7065947180
Effective search space used: 7065947180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)