BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0485600 Os08g0485600|AK068243
         (728 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22310.2  | chr1:7881714-7883644 REVERSE LENGTH=525            115   8e-26

>AT1G22310.2 | chr1:7881714-7883644 REVERSE LENGTH=525
          Length = 524

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 76/116 (65%), Gaps = 1/116 (0%)

Query: 131 NSRGVSVDLVSLSRLA-DPYDAELGKRTARMTTEEELMGFISSLAGQWVNQRMRRKLVDA 189
           N  G  VDL +L+ ++ DPY+ EL + T  + T+EE++GF+  L G+WVN   ++K+V+A
Sbjct: 278 NREGTIVDLSALASVSEDPYEEELRRITVGLKTKEEILGFLEQLNGEWVNIGKKKKVVNA 337

Query: 190 SFFGDHLPSGWRLQLGIERKDRKAWVNCFSYVSPKGQSFATCQEVSAYLMSLLGYP 245
             +G +LP GWRL L I+RK     + C  Y+SP GQ F TC+EVS YL SLL  P
Sbjct: 338 CDYGGYLPRGWRLMLYIKRKGSNLLLACRRYISPDGQQFETCKEVSTYLRSLLESP 393



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,640,544
Number of extensions: 656030
Number of successful extensions: 1964
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1963
Number of HSP's successfully gapped: 2
Length of query: 728
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 622
Effective length of database: 8,200,473
Effective search space: 5100694206
Effective search space used: 5100694206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)