BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0469400 Os09g0469400|AK101554
(377 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0469400 Similar to Isoamylase-type starch debranching ... 750 0.0
Os08g0520900 Similar to Isoamylase (Fragment) 331 6e-91
Os05g0393700 Conserved hypothetical protein 105 6e-23
>Os09g0469400 Similar to Isoamylase-type starch debranching enzyme ISO3
Length = 377
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/377 (96%), Positives = 362/377 (96%)
Query: 1 MFWFNLGNTLNCNHPVVKELILDSLRHWVEEYHIDGFRFDLASVLCRGPDGCPLDAPPLI 60
MFWFNLGNTLNCNHPVVKELILDSLRHWVEEYHIDGFRFDLASVLCRGPDGCPLDAPPLI
Sbjct: 1 MFWFNLGNTLNCNHPVVKELILDSLRHWVEEYHIDGFRFDLASVLCRGPDGCPLDAPPLI 60
Query: 61 KEIAKDAVLSRCKIIAEPWDCGGLYLVGRFPNWDRWAEWNGKYRDDLRRFIKGDPGMKGV 120
KEIAKDAVLSRCKIIAEPWDCGGLYLVGRFPNWDRWAEWNGKYRDDLRRFIKGDPGMKGV
Sbjct: 61 KEIAKDAVLSRCKIIAEPWDCGGLYLVGRFPNWDRWAEWNGKYRDDLRRFIKGDPGMKGV 120
Query: 121 FATRVSGSADLYQVNERKPYHGVNFVIAHDGFTLCDLVSYNLKHXXXXXXXXXXXXXXXF 180
FATRVSGSADLYQVNERKPYHGVNFVIAHDGFTLCDLVSYNLKH F
Sbjct: 121 FATRVSGSADLYQVNERKPYHGVNFVIAHDGFTLCDLVSYNLKHNDANGEGGCDGCNDNF 180
Query: 181 SWNCGVEGETNDLNVLSLRSRQMKNFHVALMISQGTPMMLMGDEYGHTRYGNNNSYGHDT 240
SWNCGVEGETNDLNVLSLRSRQMKNFHVALMISQGTPMMLMGDEYGHTRYGNNNSYGHDT
Sbjct: 181 SWNCGVEGETNDLNVLSLRSRQMKNFHVALMISQGTPMMLMGDEYGHTRYGNNNSYGHDT 240
Query: 241 CINNFQWEQLEQRRDGHFRFFSEMIKFRHSNPILRRDRFLNKNDVTWHEDCWENQESKFL 300
CINNFQWEQLEQRRDGHFRFFSEMIKFRHSNPILRRDRFLNKNDVTWHEDCWENQESKFL
Sbjct: 241 CINNFQWEQLEQRRDGHFRFFSEMIKFRHSNPILRRDRFLNKNDVTWHEDCWENQESKFL 300
Query: 301 AFTVHDHNSGGDIYLAFNAHDYFVDAVIPPPPHHKCWNRVVDTNLESPNDIVPEGVPFTG 360
AFTVHDHNSGGDIYLAFNAHDYFVDAVIPPPPHHKCWNRVVDTNLESPNDIVPEGVPFTG
Sbjct: 301 AFTVHDHNSGGDIYLAFNAHDYFVDAVIPPPPHHKCWNRVVDTNLESPNDIVPEGVPFTG 360
Query: 361 PKYRIAPYSSILLKAKP 377
PKYRIAPYSSILLKAKP
Sbjct: 361 PKYRIAPYSSILLKAKP 377
>Os08g0520900 Similar to Isoamylase (Fragment)
Length = 725
Score = 331 bits (848), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 183/407 (44%), Positives = 234/407 (57%), Gaps = 40/407 (9%)
Query: 7 GNTLNCNHPVVKELILDSLRHWVEEYHIDGFRFDLASVLCRG------------------ 48
GNT NCNHPVV+E I+D LR+WV E H+DGFRFDLAS++ RG
Sbjct: 321 GNTFNCNHPVVREFIVDCLRYWVTEMHVDGFRFDLASIMTRGCSLWDPVNVYGSPVEGDM 380
Query: 49 -PDGCPLDAPPLIKEIAKDAVLSRCKIIAEPWDCGGLYLVGRFPNWDRWAEWNGKYRDDL 107
G PL PPLI I+ D +L K+IAE WD GGLY VG+FP+W W+EWNGKYRD +
Sbjct: 381 TTTGTPLATPPLIDMISNDPILGDVKLIAEAWDAGGLYQVGQFPHWKIWSEWNGKYRDIV 440
Query: 108 RRFIKGDPGMKGVFATRVSGSADLYQVNERKPYHGVNFVIAHDGFTLCDLVSYNLKHXXX 167
R+FIKG G G FA + GS LYQ RKP+H +NFV AHDGFTL DLV+YN K+
Sbjct: 441 RQFIKGTDGFAGGFAECLCGSPHLYQAGGRKPWHSINFVCAHDGFTLADLVTYNKKYNSS 500
Query: 168 XXXXXXXXXXXXFSWNCGVEGETNDLNVLSLRSRQMKNFHVALMISQGTPMMLMGDEYGH 227
SWNCG EGE L+V LR RQM+NF V+LM+SQG PM MGDEYGH
Sbjct: 501 NGEDNRDGENHNLSWNCGEEGEFAGLSVKRLRKRQMRNFFVSLMVSQGVPMFYMGDEYGH 560
Query: 228 TRYGNNNSYGHDTCINNFQWEQLEQRRDGHFRFFSEMIKFRHSNPILRRDRFLNKNDVTW 287
T+ GNNN+Y HD +N F+W++ E+ D RF S M KFR L F + W
Sbjct: 561 TKGGNNNTYCHDHYVNYFRWDKKEESSDLQ-RFCSLMTKFRKQCESLGLADFPTAQRLHW 619
Query: 288 H-----EDCWENQESKFLAFTVHDHNSGGDIYLAFNAHDYFVDAVIPPPPHHKCWNRVVD 342
H + W ++ S+F+AF+ D G+IY+AFNA +P P ++ W +VD
Sbjct: 620 HGHQPGKPDW-SETSRFVAFSTKDETK-GEIYVAFNASHLPAVVGLPERPGYR-WEPLVD 676
Query: 343 TNLESPNDIVPEGVP------------FTGPKYRIAPYSSILLKAKP 377
T +P D + + +P Y + YSSI+L+ +P
Sbjct: 677 TGKPAPYDFLTDDLPDRAHAVHLFSHFLNSNLYPMLSYSSIILELQP 723
>Os05g0393700 Conserved hypothetical protein
Length = 262
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 123/277 (44%), Gaps = 40/277 (14%)
Query: 121 FATRVSGSADLYQVNERKPYHGVNFVIAHDGFTLCDLVSYNLKHXXXXXXXXXXXXXXXF 180
ATR+ GS DL+ R P N V + G +L DLVS++
Sbjct: 1 LATRLCGSGDLFST--RGPAFSFNHVSRNSGLSLVDLVSFSNDDLLSES----------- 47
Query: 181 SWNCGVEGETNDLNVLSLRSRQMKNFHVALMISQGTPMMLMGDEYGHTRYGNNNSYGHDT 240
SWNCG EG + + VL R RQ++NF L +S G P++ MGDE GH+ G + SY
Sbjct: 48 SWNCGEEGPSENSAVLQTRLRQIRNFLFILFVSLGVPVLNMGDECGHSAAG-SVSYKDRG 106
Query: 241 CINNFQWEQLE----QRRDGHFRFFSEMIKFRHSNPILRRDRFLNKNDVTWH-----EDC 291
+N W ++ + G F + + R I +R FL ++ W+ E
Sbjct: 107 PLN---WRGMKTTFVKEVTGFISFLTALRSRR--GDIFQRREFLKLENIHWYGSDLCEPG 161
Query: 292 WENQESKFLAFTVHDH-------NSGGDIYLAFNAHDYFVDAVIPPPPHHKCWNRVVDTN 344
W++ S FL ++ + GD+Y+ FNA++ V A +P W R+VDT+
Sbjct: 162 WDDPTSNFLCMHINAEVDEMAADSVRGDLYICFNANEESVSAALPALAEGSVWLRLVDTS 221
Query: 345 LESPNDIVPEGVPFTG-----PKYRIAPYSSILLKAK 376
L P E P Y + ++ +L ++K
Sbjct: 222 LAFPGFFATESNPKVQQVPGLSSYHVEAHTCVLFESK 258
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.141 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,791,637
Number of extensions: 660421
Number of successful extensions: 1096
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1092
Number of HSP's successfully gapped: 3
Length of query: 377
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 274
Effective length of database: 11,657,759
Effective search space: 3194225966
Effective search space used: 3194225966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)