Os05g0393700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0393700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 315.47 | 0.835 | 6.04 | -2.3 | 0.347 | 1.71 | -0.667 | 0.488 | 0.699 | 16.1 | 29.49 | 4910 | -- | -- |
| 315.37 | 0.827 | 6.02 | -2.19 | 0.341 | 1.76 | -0.708 | -- | 0.742 | 16.2 | 29.38 | 4955 | -- | -- |
| 316.6 | 0.829 | 6.04 | -2.32 | 0.351 | 1.7 | -- | 0.583 | 0.718 | 16.1 | 29.3 | 4873 | -- | -- |
| 316.69 | 0.829 | 6.02 | -2.19 | 0.34 | 1.77 | -- | -- | 0.738 | 16.2 | 29.4 | 4949 | -- | -- |
| 320.05 | 0.833 | 6.01 | -2.33 | -- | 1.82 | -- | 0.73 | 0.819 | -- | 28.83 | 4211 | -- | -- |
| 431.77 | 0.974 | 6.01 | -2.69 | 0.365 | -- | -0.435 | -- | 0.788 | 14.7 | -- | -- | -- | -- |
| 432.4 | 0.974 | 6.01 | -2.7 | 0.362 | -- | -- | -- | 0.785 | 14.4 | -- | -- | -- | -- |
| 320.09 | 0.833 | 5.99 | -2.17 | -- | 1.89 | -- | -- | 0.844 | -- | 28.8 | 4211 | -- | -- |
| 435.79 | 0.972 | 5.96 | -- | 0.438 | 2.22 | -- | -- | 1.03 | 16.3 | 29.2 | 4818 | -- | -- |
| 440.13 | 0.98 | 6.01 | -2.71 | -- | -- | -- | -- | 0.776 | -- | -- | -- | -- | -- |
| 623.97 | 1.17 | 5.94 | -- | 0.414 | -- | -- | -- | 1.09 | 14.5 | -- | -- | -- | -- |
| 426.69 | 0.962 | 5.91 | -- | -- | 2.42 | -- | -- | 1.22 | -- | 27.58 | 4243 | -- | -- |
| 634.05 | 1.18 | 5.94 | -- | -- | -- | -- | -- | 1.08 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 314.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 2 | 315.53 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 3 | 315.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 4 | 315.61 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 12 | 316.53 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 25 | 317.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 26 | 317.28 | temperature | 25 | 4320 | > th | dose dependent | sin | 9 | NA |
| 27 | 317.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 32 | 317.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 49 | 318.35 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 62 | 318.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 68 | 318.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 111 | 320.07 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 142 | 320.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 175 | 321.35 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 179 | 321.39 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 189 | 321.43 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 14 |
| 244 | 321.99 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 247 | 322.00 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 256 | 322.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 260 | 322.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 514 | 323.52 | temperature | 30 | 4320 | < th | dose independent | sin | 1 | NA |
| 526 | 323.61 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 18 |
| 528 | 323.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 16 |
| 787 | 324.47 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 795 | 324.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 796 | 324.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 852 | 324.51 | temperature | 25 | 4320 | > th | dose independent | sin | 8 | NA |
| 907 | 324.55 | temperature | 30 | 4320 | > th | dose independent | sin | 0 | NA |