BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0393700 Os05g0393700|009-005-F10
(262 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03310.2 | chr1:813975-816623 FORWARD LENGTH=883 290 7e-79
AT4G09020.1 | chr4:5784099-5788839 FORWARD LENGTH=765 118 4e-27
AT2G39930.1 | chr2:16666078-16672183 FORWARD LENGTH=784 97 1e-20
>AT1G03310.2 | chr1:813975-816623 FORWARD LENGTH=883
Length = 882
Score = 290 bits (741), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 147/272 (54%), Positives = 190/272 (69%), Gaps = 10/272 (3%)
Query: 1 LATRLCGSGDLFST-RGPAFSFNHVSRNSGLSLVDLVSFSNDDLLSESSWNCGEEGPSEN 59
LATR+CGSGD+F+ RGPAFSFN++SRNSGLSLVD+VSFS +L SE SWNCGEEG +
Sbjct: 611 LATRICGSGDVFTDGRGPAFSFNYISRNSGLSLVDIVSFSGPELASELSWNCGEEGATNK 670
Query: 60 SAVLQTRLRQIRNFLFILFVSLGVPVLNMGDECGHSAAGSVSYKDRGPLNWRGMKTTFVK 119
SAVLQ RL+QIRNFLFI ++SLGVPVLNMGDECG S GS + R P +W + + F
Sbjct: 671 SAVLQRRLKQIRNFLFIQYISLGVPVLNMGDECGISTRGSPLLESRKPFDWNLLASAFGT 730
Query: 120 EVTGFISFLTALRSRRGDIFQRREFLKLENIHWYGSDLCEPGWDDPTSNFLCMHINAEVD 179
++T FISF+T++R+RR D+FQRR+FLK ENI WY +D P W+DP S FL + I +E +
Sbjct: 731 QITQFISFMTSVRARRSDVFQRRDFLKPENIVWYANDQTTPKWEDPASKFLALEIKSESE 790
Query: 180 EMAADSV-------RGDLYICFNANEESVSAALPALAEGSVWLRLVDTSLAFPGFFATES 232
E S+ DL+I FNA++ S LP+L +GS W RLVDT+L FPGFF+ E
Sbjct: 791 EEETASLAEPNEPKSNDLFIGFNASDHPESVVLPSLPDGSKWRRLVDTALPFPGFFSVEG 850
Query: 233 NPKVQQVP--GLSSYHVEAHTCVLFESKSALA 262
V + P L Y ++ ++C LFE+ + A
Sbjct: 851 ETVVAEEPLQQLVVYEMKPYSCTLFETINTTA 882
>AT4G09020.1 | chr4:5784099-5788839 FORWARD LENGTH=765
Length = 764
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 129/275 (46%), Gaps = 36/275 (13%)
Query: 1 LATRLCGSGDLF--STRGPAFSFNHVSRNSGLSLVDLVSFS-----------NDDLLSES 47
ATR+ GS DL+ + R P N V + G +L DLVS++ ND
Sbjct: 509 FATRVSGSSDLYQVNQRKPYHGVNFVIAHDGFTLRDLVSYNFKHNEANGEGGNDGCNDNH 568
Query: 48 SWNCGEEGPSENSAVLQTRLRQIRNFLFILFVSLGVPVLNMGDECGHSAAG-SVSYKDRG 106
SWNCG EG + ++ + R RQ++NF L +S G P++ MGDE GH+ G + SY
Sbjct: 569 SWNCGFEGETGDAHIKSLRTRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDT 628
Query: 107 PLNWRGMKTTFVKEVTGFISFLTALRSRRG-DIFQRREFLKLENIHWYGSDLCEPGWDDP 165
LN K K+ F F ++ R + + FL I W+ E WD+
Sbjct: 629 SLNNFQWKELDAKKQNHFRFFSEVIKFRHSHHVLKHENFLTQGEITWH-----EDNWDNS 683
Query: 166 TSNFLCMHINAEVDEMAADSVRG-DLYICFNANEESVSAALPALAEGSVWLRLVDTSLAF 224
S FL ++ D + G D+Y+ FNA++ V A +P G W R+ DT+L
Sbjct: 684 ESKFLAFTLH--------DGIGGRDIYVAFNAHDYFVKALIPQPPPGKQWFRVADTNLES 735
Query: 225 PGFFATESNPKVQQVPGLS-SYHVEAHTCVLFESK 258
P F E V G++ +Y+V + +L +SK
Sbjct: 736 PDDFVREG------VAGVADTYNVAPFSSILLQSK 764
>AT2G39930.1 | chr2:16666078-16672183 FORWARD LENGTH=784
Length = 783
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 114/241 (47%), Gaps = 28/241 (11%)
Query: 1 LATRLCGSGDLFST-RGPAFSFNHVSRNSGLSLVDLVSFSNDDLLSES-----------S 48
A LCGS +L+ R P S N + + G +L DLV+++N + L+ S
Sbjct: 510 FAECLCGSPNLYQGGRKPWHSINFICAHDGFTLADLVTYNNKNNLANGEENNDGENHNYS 569
Query: 49 WNCGEEGPSENSAVLQTRLRQIRNFLFILFVSLGVPVLNMGDECGHSAAG-SVSYKDRGP 107
WNCGEEG + +V + R RQ+RNF L VS GVP++ MGDE GH+ G + +Y
Sbjct: 570 WNCGEEGDFASISVKRLRKRQMRNFFVSLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNY 629
Query: 108 LNW-RGMKTTFVKEVTGFISFLTALRSRRGDI--FQRREFLKLENIHWYGSDLCEPGWDD 164
+N+ R K + + F F L R + +F + + W+G P W +
Sbjct: 630 MNYFRWDKKE--EAHSDFFRFCRILIKFRDECESLGLNDFPTAKRLQWHGLAPEIPNWSE 687
Query: 165 PTSNFLCMHINAEVDEMAADSVRGDLYICFNANEESVSAALPALAEGSVWLRLVDTSLAF 224
TS F+ + DSV+ ++Y+ FN + + +LP G W VDTS
Sbjct: 688 -TSRFVAFSL--------VDSVKKEIYVAFNTSHLATLVSLPN-RPGYRWEPFVDTSKPS 737
Query: 225 P 225
P
Sbjct: 738 P 738
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,730,000
Number of extensions: 230455
Number of successful extensions: 496
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 3
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)