Os08g0520900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Isoamylase (Fragment).
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Os08g0520900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Isoamylase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.47 | 0.591 | 8.45 | 0.118 | 1.98 | -2.99 | 0.385 | 2.79 | -0.0541 | 23.5 | 24.05 | 256 | 5.78 | 6.37 |
| 166.69 | 0.601 | 8.46 | 0.0774 | 1.91 | -2.89 | 0.233 | -- | -0.0577 | 23.3 | 23.69 | 275 | 5.68 | 6.45 |
| 152.27 | 0.575 | 8.46 | 0.273 | 1.99 | -3.14 | -- | 2.88 | -0.042 | 23.5 | 23.6 | 284 | 5.43 | 6.46 |
| 156.3 | 0.582 | 8.52 | -0.0963 | 1.82 | -3.08 | -- | -- | -0.195 | 23.8 | 23.36 | 314 | 4.98 | 6.85 |
| 193.2 | 0.647 | 8.42 | 0.279 | -- | -4.17 | -- | 2.84 | 0.114 | -- | 21.9 | 319 | 4.55 | 7.89 |
| 392.84 | 0.929 | 8.59 | -0.513 | 3.79 | -- | 0.447 | -- | -0.43 | 23.5 | -- | -- | -- | -- |
| 393.7 | 0.929 | 8.59 | -0.531 | 3.79 | -- | -- | -- | -0.432 | 23.5 | -- | -- | -- | -- |
| 175.41 | 0.617 | 8.4 | 0.251 | -- | -4.24 | -- | -- | 0.0737 | -- | 21.2 | 378 | 4.17 | 7.77 |
| 155.31 | 0.58 | 8.48 | -- | 1.78 | -3.13 | -- | -- | -0.152 | 23.6 | 23.3 | 313 | 5.02 | 6.78 |
| 1296.62 | 1.68 | 8.5 | -0.428 | -- | -- | -- | -- | -0.39 | -- | -- | -- | -- | -- |
| 401.14 | 0.937 | 8.57 | -- | 3.79 | -- | -- | -- | -0.373 | 23.5 | -- | -- | -- | -- |
| 170.14 | 0.608 | 8.41 | -- | -- | -4.27 | -- | -- | -0.047 | -- | 21.1 | 371 | 4.27 | 8.07 |
| 1301.45 | 1.68 | 8.49 | -- | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 8 | 182.80 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 6 |
| 95 | 222.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 141 | 232.13 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 11 |
| 144 | 232.56 | temperature | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 223 | 241.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 225 | 241.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 235 | 242.40 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 242 | 242.92 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 272 | 244.57 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 328 | 247.75 | temperature | 25 | 90 | < th | dose independent | sin | 3 | NA |
| 338 | 248.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 10 |
| 402 | 251.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 806 | 267.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |