Os09g0469400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Isoamylase-type starch debranching enzyme ISO3.
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Os09g0469400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Isoamylase-type starch debranching enzyme ISO3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.53 | 0.437 | 9.96 | -1.04 | 0.95 | -0.694 | 1.69 | 0.451 | -0.409 | 6.63 | 83 | 850 | -- | -- |
| 86.56 | 0.433 | 9.96 | -0.99 | 0.943 | -0.706 | 1.86 | -- | -0.419 | 6.69 | 84.76 | 851 | -- | -- |
| 92.16 | 0.447 | 9.96 | -1.06 | 1.03 | -0.619 | -- | 1.11 | -0.433 | 6.34 | 84 | 702 | -- | -- |
| 95.22 | 0.454 | 9.96 | -0.97 | 0.948 | -0.658 | -- | -- | -0.421 | 6.52 | 84.61 | 838 | -- | -- |
| 119.49 | 0.509 | 9.97 | -1.06 | -- | 0.403 | -- | 1.55 | -0.351 | -- | 74.76 | 469 | -- | -- |
| 98.59 | 0.465 | 9.95 | -1.01 | 0.75 | -- | 1.65 | -- | -0.361 | 5.8 | -- | -- | -- | -- |
| 104.73 | 0.479 | 9.96 | -1 | 0.765 | -- | -- | -- | -0.369 | 5.32 | -- | -- | -- | -- |
| 120.3 | 0.511 | 9.97 | -0.914 | -- | 0.68 | -- | -- | -0.384 | -- | 66.8 | 434 | -- | -- |
| 119.34 | 0.509 | 9.95 | -- | 0.848 | -0.713 | -- | -- | -0.342 | 6.69 | 86 | 953 | -- | -- |
| 135.24 | 0.543 | 9.97 | -0.977 | -- | -- | -- | -- | -0.35 | -- | -- | -- | -- | -- |
| 131.24 | 0.536 | 9.93 | -- | 0.748 | -- | -- | -- | -0.257 | 5.37 | -- | -- | -- | -- |
| 142.2 | 0.555 | 9.95 | -- | -- | 0.756 | -- | -- | -0.288 | -- | 66.59 | 434 | -- | -- |
| 160.39 | 0.591 | 9.94 | -- | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.13 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 15 |
| 2 | 84.22 | humidity | 80 | 270 | > th | dose independent | rect. | 23 | 17 |
| 10 | 84.82 | humidity | 70 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 11 | 84.83 | humidity | 70 | 30 | > th | dose dependent | sin | 0 | NA |
| 17 | 84.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 28 | 85.26 | humidity | 80 | 270 | > th | dose independent | sin | 3 | NA |
| 34 | 85.43 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 36 | 85.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 40 | 85.51 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 46 | 85.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 49 | 85.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 54 | 85.71 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 56 | 85.74 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 72 | 85.96 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 80 | 86.03 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 86 | 86.06 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 123 | 86.34 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 184 | 86.73 | humidity | 70 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 235 | 87.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 237 | 87.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 244 | 87.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 255 | 87.09 | humidity | 80 | 90 | > th | dose independent | rect. | 7 | 12 |
| 263 | 87.12 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 281 | 87.21 | humidity | 70 | 10 | > th | dose independent | rect. | 1 | 15 |
| 302 | 87.31 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 311 | 87.33 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 11 |
| 314 | 87.36 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 334 | 87.43 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 358 | 87.52 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 362 | 87.54 | humidity | 80 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 366 | 87.54 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 371 | 87.55 | humidity | 70 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 390 | 87.62 | humidity | 80 | 270 | > th | dose independent | rect. | 9 | 7 |
| 403 | 87.64 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 435 | 87.74 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 439 | 87.74 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 456 | 87.78 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 461 | 87.80 | humidity | 80 | 720 | < th | dose independent | sin | 22 | NA |
| 463 | 87.81 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 14 |
| 479 | 87.85 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 495 | 87.89 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 496 | 87.90 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 516 | 87.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 520 | 87.95 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 15 |
| 526 | 87.97 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 3 |
| 570 | 88.08 | radiation | 10 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 582 | 88.09 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 593 | 88.10 | humidity | 70 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 605 | 88.14 | humidity | 80 | 270 | > th | dose independent | rect. | 11 | 4 |
| 624 | 88.17 | radiation | 40 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 628 | 88.18 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 718 | 88.33 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 16 |
| 860 | 88.55 | humidity | 70 | 270 | > th | dose dependent | rect. | 11 | 4 |
| 883 | 88.57 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 21 |
| 910 | 88.60 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 9 |
| 972 | 88.68 | humidity | 80 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 1000 | 88.72 | humidity | 80 | 720 | > th | dose dependent | rect. | 10 | 16 |