BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0459200 Os09g0459200|AK110733
(157 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0459200 Conserved hypothetical protein 207 2e-54
Os02g0762600 Conserved hypothetical protein 91 4e-19
Os08g0474100 Conserved hypothetical protein 84 6e-17
>Os09g0459200 Conserved hypothetical protein
Length = 157
Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 108/157 (68%)
Query: 1 MACVNMYNPEHHHHQSSSFMAPRISFSSDFALEXXXXXXXXXXXXXXGDADFEFSVGSHP 60
MACVNMYNPEHHHHQSSSFMAPRISFSSDFALE GDADFEFSVGSHP
Sbjct: 1 MACVNMYNPEHHHHQSSSFMAPRISFSSDFALEPPPPAQQQPAVRAPGDADFEFSVGSHP 60
Query: 61 MMAADQLISKGRLLPLREAPXXXXXXXXXXRPLTLRDELRTDSRHGRVPRAPNIRWKEFX 120
MMAADQLISKGRLLPLREAP RPLTLRDELRTDSRHGRVPRAPNIRWKEF
Sbjct: 61 MMAADQLISKGRLLPLREAPHGHGGADAGGRPLTLRDELRTDSRHGRVPRAPNIRWKEFL 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXTQMDLGGQGSTRD 157
TQMDLGGQGSTRD
Sbjct: 121 GLKKAPKKAPTADAAAGATSSSADTQMDLGGQGSTRD 157
>Os02g0762600 Conserved hypothetical protein
Length = 153
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 1 MACVNMYNPEHHHHQSSS---FMAPRISFSSDFALEXX--XXXXXXXXXXXXGDADFEFS 55
MAC+NMYNP+ + PRISFSSDF +E D +FEFS
Sbjct: 1 MACINMYNPDGGAAFGGGQPPALGPRISFSSDFVVEPPPPVQNRAMNLRCQEEDINFEFS 60
Query: 56 VGSHPMMAADQLISKGRLLPLREAPXXXXXXXXXXRPLTLRDELRTDSRHGRVPRAPNIR 115
VGSHPMMAADQL SKGR+LPL++ P TLRDELR D R + R
Sbjct: 61 VGSHPMMAADQLFSKGRILPLKDG-----GFSSGRPPTTLRDELRCDDRASAKGSS---R 112
Query: 116 WKEF 119
WKE
Sbjct: 113 WKEM 116
>Os08g0474100 Conserved hypothetical protein
Length = 157
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 69/134 (51%), Gaps = 27/134 (20%)
Query: 6 MYNPEHH-----HHQSSSFMAP-RISFSSDFALEXXXXXXXXXXXXXXGDADFEFS-VGS 58
MYNPE HHQ MAP R+SFSSDFALE GDADFEFS VGS
Sbjct: 1 MYNPEQQQPPLPHHQ---LMAPPRMSFSSDFALEPPPPPSGPGRASM-GDADFEFSAVGS 56
Query: 59 HPMMAADQLISKGRLLPLREAPXXXXXXXXXXRPLTLRDELR-------TDSRHGRVPR- 110
PM+ ADQL SKGR+LP+RE R +TLRDELR D RH R R
Sbjct: 57 RPMITADQLFSKGRILPMREV---SGGGGGGGRAVTLRDELRGHDGAAVADGRHRRAARP 113
Query: 111 -----APNIRWKEF 119
+RWKE
Sbjct: 114 AGSGGGGGVRWKEM 127
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,806,479
Number of extensions: 92733
Number of successful extensions: 372
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 65
Effective length of database: 12,232,113
Effective search space: 795087345
Effective search space used: 795087345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)