Os08g0474100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0474100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 283.86 | 0.792 | 3.39 | -2.13 | 0.102 | -6.3 | 0.268 | 31.5 | -0.211 | 14.1 | 1000 | 9 | -- | -- |
| 297.9 | 0.81 | 3.02 | -0.0119 | 0.102 | -0.738 | -0.197 | -- | -0.21 | 18 | 1000 | 9 | -- | -- |
| 283.97 | 0.785 | 3.4 | -2.14 | 0.115 | -6.32 | -- | 31.6 | -0.209 | 15.6 | 1000 | 3 | -- | -- |
| 297.83 | 0.804 | 3.02 | -0.0126 | 0.105 | -0.743 | -- | -- | -0.209 | 16.9 | 1000 | 2 | -- | -- |
| 284.71 | 0.786 | 3.4 | -2.13 | -- | -6.29 | -- | 31.4 | -0.213 | -- | 1000 | 3 | -- | -- |
| 312.78 | 0.829 | 3.03 | 0.123 | 0.117 | -- | 0.0674 | -- | -0.26 | 16.2 | -- | -- | -- | -- |
| 312.78 | 0.828 | 3.03 | 0.123 | 0.119 | -- | -- | -- | -0.26 | 16.5 | -- | -- | -- | -- |
| 298.39 | 0.805 | 3.02 | -0.015 | -- | -0.742 | -- | -- | -0.213 | -- | 1000 | 2 | -- | -- |
| 297.83 | 0.804 | 3.02 | -- | 0.104 | -0.736 | -- | -- | -0.209 | 16.9 | 1000 | 2 | -- | -- |
| 313.54 | 0.827 | 3.03 | 0.118 | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
| 313.18 | 0.828 | 3.03 | -- | 0.117 | -- | -- | -- | -0.274 | 16.6 | -- | -- | -- | -- |
| 298.4 | 0.805 | 3.02 | -- | -- | -0.74 | -- | -- | -0.211 | -- | 1000 | 2 | -- | -- |
| 313.91 | 0.827 | 3.03 | -- | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 280.12 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 22 | 20 |
| 5 | 280.44 | atmosphere | 1000 | 10 | > th | dose independent | sin | 23 | NA |
| 6 | 280.44 | atmosphere | 1000 | 10 | < th | dose independent | sin | 23 | NA |
| 11 | 280.62 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 4 | 14 |
| 28 | 281.68 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 2 | 16 |
| 75 | 283.22 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 4 | 20 |
| 88 | 283.46 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 2 | 22 |
| 109 | 283.85 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 23 |
| 115 | 283.95 | atmosphere | 1000 | 10 | > th | dose independent | no | NA | NA |
| 117 | 283.95 | atmosphere | 1000 | 10 | < th | dose independent | no | NA | NA |
| 119 | 283.95 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 11 | 23 |
| 126 | 284.07 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 13 | 23 |
| 135 | 284.19 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 23 |
| 144 | 284.34 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 23 |
| 156 | 284.56 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 15 | 23 |
| 193 | 285.01 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 8 | 10 |
| 277 | 286.41 | temperature | 30 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 320 | 286.95 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 20 | 23 |
| 325 | 287.01 | wind | 1 | 1440 | < th | dose independent | rect. | 2 | 3 |
| 351 | 287.27 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 371 | 287.32 | temperature | 30 | 270 | > th | dose dependent | sin | 8 | NA |
| 441 | 288.11 | wind | 1 | 1440 | > th | dose independent | rect. | 2 | 3 |
| 448 | 288.17 | wind | 1 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 538 | 288.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 554 | 289.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 579 | 289.46 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 8 | 23 |
| 612 | 289.76 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 623 | 289.88 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 626 | 289.91 | radiation | 20 | 10 | > th | dose independent | rect. | 8 | 1 |
| 653 | 290.12 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 20 |
| 656 | 290.16 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 673 | 290.30 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 676 | 290.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 680 | 290.33 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 693 | 290.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 696 | 290.46 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 719 | 290.50 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 753 | 290.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 790 | 290.81 | radiation | 20 | 30 | > th | dose independent | rect. | 16 | 16 |
| 863 | 291.10 | temperature | 30 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 869 | 291.12 | temperature | 30 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 886 | 291.24 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 889 | 291.26 | temperature | 30 | 90 | < th | dose independent | rect. | 20 | 23 |
| 914 | 291.31 | temperature | 30 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 945 | 291.40 | temperature | 30 | 270 | > th | dose independent | sin | 9 | NA |
| 953 | 291.44 | atmosphere | 1005 | 1440 | > th | dose independent | sin | 23 | NA |
| 958 | 291.45 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 989 | 291.55 | temperature | 30 | 90 | < th | dose independent | rect. | 8 | 10 |