FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0762600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0344) R2 : 0.268
β1 : -1.26 (0.126) R2dD : 0.168 R2D : 0.151
β2 : 0.693 (0.0852) R2dC : 0.107 R2C : 0.103
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.186 (0.0734) R2dN8 : 0.0139 R2N8 : -0.00658
σ : 0.646
deviance : 190.51
__
_____
C
peak time of C : 9.05
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.97 0.621 3.63 -1.67 0.666 2.6 -1.34 -16.7 -0.18 9.16 1000 1430 -- --
176.93 0.62 3.53 -1.17 0.644 1.56 -1.27 -- -0.167 8.99 994.5 2681 -- --
181.1 0.627 3.62 -1.69 0.675 2.56 -- -16.6 -0.188 8.94 999.7 1483 -- --
182.92 0.63 3.53 -1.2 0.668 1.62 -- -- -0.16 8.92 994.5 2637 -- --
206.73 0.67 3.63 -1.64 -- 2.55 -- -16.5 -0.173 -- 999.3 1585 -- --
183.18 0.634 3.54 -1.21 0.682 -- -1.44 -- -0.184 9.29 -- -- -- --
190.51 0.646 3.54 -1.26 0.693 -- -- -- -0.186 9.05 -- -- -- --
208.31 0.672 3.55 -1.2 -- 1.82 -- -- -0.156 -- 994.6 2238 -- --
220.27 0.691 3.5 -- 0.659 1.97 -- -- -0.0277 9.02 993.9 2730 -- --
218.13 0.69 3.56 -1.26 -- -- -- -- -0.182 -- -- -- -- --
232.54 0.713 3.51 -- 0.692 -- -- -- -0.0456 9.19 -- -- -- --
245.65 0.73 3.52 -- -- 2.22 -- -- -0.0233 -- 994.2 2231 -- --
260.28 0.753 3.52 -- -- -- -- -- -0.0419 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.04 radiation 20.0 30 > th dose independent rect. 11 1
2 171.41 humidity 70.0 30 < th dose independent rect. 11 1
4 171.85 humidity 80.0 30 < th dose independent rect. 3 9
6 171.88 humidity 80.0 30 < th dose independent rect. 7 5
13 172.15 temperature 15.0 90 > th dose independent rect. 6 6
17 172.73 humidity 90.0 30 < th dose dependent rect. 17 19
18 172.76 humidity 90.0 30 < th dose dependent rect. 5 7
30 172.96 temperature 10.0 30 > th dose dependent rect. 6 6
44 173.34 humidity 90.0 30 < th dose dependent rect. 11 1
45 173.34 radiation 10.0 10 > th dose dependent rect. 11 1
58 173.64 humidity 90.0 30 < th dose dependent rect. 19 17
65 173.74 temperature 15.0 30 > th dose dependent rect. 17 19
70 173.80 wind 1.0 10 > th dose independent rect. 12 18
78 173.89 temperature 30.0 10 < th dose independent rect. 6 6
90 174.00 wind 9.0 10 < th dose independent rect. 6 6
92 174.00 radiation 40.0 90 > th dose dependent rect. 10 2
98 174.04 radiation 1.0 270 < th dose dependent rect. 21 17
101 174.07 wind 1.0 10 > th dose independent rect. 6 6
104 174.08 radiation 10.0 90 > th dose independent rect. 6 6
118 174.09 atmosphere 1000.0 30 > th dose independent rect. 12 18
121 174.11 humidity 90.0 30 < th dose dependent rect. 22 14
122 174.12 humidity 80.0 30 < th dose independent rect. 17 19
126 174.14 temperature 20.0 30 > th dose independent rect. 2 10
132 174.18 humidity 80.0 30 < th dose independent rect. 20 16
169 174.47 wind 9.0 30 < th dose independent rect. 12 18
195 174.60 temperature 15.0 30 > th dose dependent rect. 2 10
198 174.63 atmosphere 995.0 4320 > th dose independent rect. 3 3
205 174.66 atmosphere 1015.0 4320 < th dose dependent rect. 16 1
206 174.67 atmosphere 995.0 4320 > th dose independent rect. 3 8
213 174.69 temperature 10.0 1440 > th dose independent rect. 7 6
216 174.69 atmosphere 995.0 1440 > th dose independent rect. 7 6
229 174.69 temperature 10.0 1440 > th dose independent rect. 13 18
235 174.70 radiation 40.0 1440 < th dose dependent rect. 16 1
241 174.73 wind 1.0 720 < th dose independent rect. 4 1
243 174.74 atmosphere 1000.0 30 > th dose independent rect. 2 10
249 174.76 atmosphere 995.0 4320 > th dose dependent rect. 16 1
253 174.78 atmosphere 995.0 30 > th dose independent rect. 6 6
254 174.78 atmosphere 1015.0 30 < th dose independent rect. 6 6
256 174.78 temperature 10.0 30 > th dose independent rect. 12 18
261 174.79 radiation 20.0 1440 < th dose dependent rect. 16 1
263 174.80 precipitation 0.1 30 < th dose independent rect. 6 6
266 174.80 precipitation 0.1 30 < th dose dependent rect. 6 6
283 174.87 humidity 50.0 90 > th dose dependent rect. 23 16
300 174.93 atmosphere 1000.0 1440 < th dose dependent rect. 10 16
312 174.93 atmosphere 1000.0 1440 < th dose dependent rect. 5 20
323 174.94 atmosphere 1000.0 1440 < th dose dependent rect. 5 18
349 174.95 atmosphere 1000.0 1440 < th dose dependent sin 17 NA
359 174.95 atmosphere 1000.0 1440 < th dose dependent rect. 1 20
405 174.97 atmosphere 1000.0 1440 < th dose dependent no NA NA
429 174.98 atmosphere 1000.0 1440 < th dose dependent rect. 16 23
432 174.99 atmosphere 995.0 4320 > th dose dependent rect. 10 1
480 175.02 radiation 1.0 1440 > th dose dependent rect. 16 1
510 175.04 atmosphere 1015.0 4320 < th dose dependent rect. 12 1
533 175.06 atmosphere 1000.0 1440 < th dose dependent rect. 16 3
536 175.06 atmosphere 1000.0 1440 < th dose dependent rect. 15 7
554 175.08 radiation 10.0 1440 > th dose independent rect. 15 2
555 175.08 atmosphere 1000.0 1440 < th dose dependent rect. 16 1
558 175.08 atmosphere 1015.0 4320 < th dose dependent rect. 12 6
563 175.09 radiation 40.0 10 > th dose independent rect. 11 1
564 175.09 atmosphere 1000.0 1440 < th dose independent rect. 11 2
570 175.09 atmosphere 1000.0 1440 < th dose dependent rect. 7 7
571 175.09 atmosphere 995.0 4320 > th dose dependent rect. 10 8
585 175.10 radiation 1.0 10 > th dose dependent rect. 6 6
586 175.10 atmosphere 1015.0 4320 < th dose dependent rect. 10 8
635 175.13 radiation 1.0 10 > th dose dependent rect. 17 19
638 175.14 atmosphere 995.0 4320 > th dose dependent rect. 10 3
650 175.15 atmosphere 995.0 4320 > th dose dependent rect. 12 1
651 175.15 atmosphere 995.0 4320 > th dose dependent rect. 12 6
667 175.16 radiation 1.0 270 < th dose independent rect. 21 17
678 175.16 temperature 25.0 30 > th dose dependent rect. 20 14
686 175.17 atmosphere 1000.0 1440 < th dose dependent rect. 10 3
757 175.23 atmosphere 1000.0 1440 > th dose independent rect. 11 2
760 175.23 atmosphere 1015.0 4320 < th dose dependent rect. 10 1
795 175.25 atmosphere 1015.0 4320 < th dose dependent rect. 10 3
804 175.26 atmosphere 1010.0 4320 < th dose independent rect. 16 1
827 175.27 atmosphere 995.0 30 > th dose dependent rect. 12 18
828 175.28 atmosphere 1000.0 1440 < th dose independent rect. 18 3
847 175.30 atmosphere 1000.0 1440 > th dose independent rect. 19 2
871 175.31 atmosphere 1000.0 1440 < th dose dependent rect. 13 1
883 175.32 humidity 50.0 4320 < th dose independent rect. 11 3
895 175.33 atmosphere 1010.0 4320 > th dose independent rect. 16 1
896 175.33 temperature 25.0 30 > th dose independent rect. 19 17
965 175.39 precipitation 0.1 30 < th dose independent rect. 12 18
975 175.39 precipitation 0.1 30 < th dose dependent rect. 12 18
979 175.40 atmosphere 995.0 4320 > th dose dependent sin 23 NA