BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0762600 Os02g0762600|AK110321
         (153 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66800.1  | chr5:26671433-26672116 FORWARD LENGTH=184           59   1e-09
AT4G34419.1  | chr4:16456597-16456986 FORWARD LENGTH=130           53   5e-08
AT3G19200.1  | chr3:6649478-6650006 REVERSE LENGTH=144             49   1e-06

>AT5G66800.1 | chr5:26671433-26672116 FORWARD LENGTH=184
          Length = 183

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 12/89 (13%)

Query: 1  MACINMYNPDXXXXXXXXXXXXXXXRISFSSDFV-VEPPPPVQNRAMNLRCQEEDI---- 55
          MAC+ MYN +               RISFS+DFV + P      R+  L  QE       
Sbjct: 1  MACLEMYNSNGGGGTPMSP------RISFSNDFVEIRPETTKTTRSSPLSKQEGSSSSFS 54

Query: 56 -NFEFSVGSHPMMAADQLFSKGRILPLKD 83
           NFEFSV ++ MM AD+LFSKG++LP K+
Sbjct: 55 DNFEFSVSNYTMMPADELFSKGKLLPFKE 83



>AT4G34419.1 | chr4:16456597-16456986 FORWARD LENGTH=130
          Length = 129

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 10/99 (10%)

Query: 26  RISFSSDFVVEPPPPVQNRAMNLRCQEEDINFEFSVGSHPMMAADQLFSKGRILPLKDGG 85
           RISFSS F       ++ +   +       +FEF V +  M  AD++F  G ILPLK+  
Sbjct: 19  RISFSSGFAATKHEMIKYKEAPVSSD----DFEFGVENFSMTTADEIFFDGMILPLKEEV 74

Query: 86  FSSGRPPTTLRDELRCDD----RASAKGSS-RWKEMLGL 119
            ++ R  +TLR+EL  +D    R+ +KGSS  W+E LGL
Sbjct: 75  NTTKR-MSTLREELSEEDGDSPRSKSKGSSGWWRERLGL 112



>AT3G19200.1 | chr3:6649478-6650006 REVERSE LENGTH=144
          Length = 143

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 11/111 (9%)

Query: 26  RISFSSDFVVEPPPPVQNRA---MNLRCQEEDINFEFSVGSHPMM-AADQLFSKGRILPL 81
           RISFS+DF         +RA   M  +      +F+F+V +     AAD++F  G +LPL
Sbjct: 18  RISFSNDFADSDSKHTASRADGQMKYKEAPVSSDFKFNVENFGFTSAADEIFFGGVLLPL 77

Query: 82  KDGGFSSGRPPTTLRDELRCDDR---ASAKGSSRWKEMLGLRKPLCVGGVN 129
           +    ++ R  TTLRDEL   D     S+KGS  W + LGL K   +   N
Sbjct: 78  EK---TTQRKVTTLRDELSAQDSDRTISSKGSRNWWK-LGLNKSKKIHSNN 124



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,315,444
Number of extensions: 131144
Number of successful extensions: 285
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 63
Effective length of database: 8,639,129
Effective search space: 544265127
Effective search space used: 544265127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)