BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0762600 Os02g0762600|AK110321
(153 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0762600 Conserved hypothetical protein 281 2e-76
Os09g0459200 Conserved hypothetical protein 94 3e-20
Os08g0474100 Conserved hypothetical protein 77 4e-15
>Os02g0762600 Conserved hypothetical protein
Length = 153
Score = 281 bits (718), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/153 (90%), Positives = 138/153 (90%)
Query: 1 MACINMYNPDXXXXXXXXXXXXXXXRISFSSDFVVEPPPPVQNRAMNLRCQEEDINFEFS 60
MACINMYNPD RISFSSDFVVEPPPPVQNRAMNLRCQEEDINFEFS
Sbjct: 1 MACINMYNPDGGAAFGGGQPPALGPRISFSSDFVVEPPPPVQNRAMNLRCQEEDINFEFS 60
Query: 61 VGSHPMMAADQLFSKGRILPLKDGGFSSGRPPTTLRDELRCDDRASAKGSSRWKEMLGLR 120
VGSHPMMAADQLFSKGRILPLKDGGFSSGRPPTTLRDELRCDDRASAKGSSRWKEMLGLR
Sbjct: 61 VGSHPMMAADQLFSKGRILPLKDGGFSSGRPPTTLRDELRCDDRASAKGSSRWKEMLGLR 120
Query: 121 KPLCVGGVNGTAKKSTTVDTEMVTDVADSKQEQ 153
KPLCVGGVNGTAKKSTTVDTEMVTDVADSKQEQ
Sbjct: 121 KPLCVGGVNGTAKKSTTVDTEMVTDVADSKQEQ 153
>Os09g0459200 Conserved hypothetical protein
Length = 157
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 77/129 (59%), Gaps = 13/129 (10%)
Query: 1 MACINMYNPDXXXXXXXXXXXXXXXRISFSSDFVVEPPPPVQNRAMNLRCQEEDINFEFS 60
MAC+NMYNP+ RISFSSDF +EPPP + +R D +FEFS
Sbjct: 1 MACVNMYNPEHHHHQSSSFMAP---RISFSSDFALEPPP-PAQQQPAVRA-PGDADFEFS 55
Query: 61 VGSHPMMAADQLFSKGRILPLKDG-----GFSSGRPPTTLRDELRCDDRASAKGSS---R 112
VGSHPMMAADQL SKGR+LPL++ G +G P TLRDELR D R + R
Sbjct: 56 VGSHPMMAADQLISKGRLLPLREAPHGHGGADAGGRPLTLRDELRTDSRHGRVPRAPNIR 115
Query: 113 WKEMLGLRK 121
WKE LGL+K
Sbjct: 116 WKEFLGLKK 124
>Os08g0474100 Conserved hypothetical protein
Length = 157
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 71/136 (52%), Gaps = 22/136 (16%)
Query: 6 MYNPDXXXXXXXXXXXXXXXRISFSSDFVVEPPPPVQNRAMNLRCQEEDINFEFS-VGSH 64
MYNP+ R+SFSSDF +EP + R D +FEFS VGS
Sbjct: 1 MYNPEQQQPPLPHHQLMAPPRMSFSSDFALEP---PPPPSGPGRASMGDADFEFSAVGSR 57
Query: 65 PMMAADQLFSKGRILPLKD--GGFSSGRPPTTLRDELRCDDRAS-AKGSS---------- 111
PM+ ADQLFSKGRILP+++ GG G TLRDELR D A+ A G
Sbjct: 58 PMITADQLFSKGRILPMREVSGGGGGGGRAVTLRDELRGHDGAAVADGRHRRAARPAGSG 117
Query: 112 -----RWKEMLGLRKP 122
RWKEMLGL++P
Sbjct: 118 GGGGVRWKEMLGLKRP 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,469,392
Number of extensions: 223712
Number of successful extensions: 528
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 61
Effective length of database: 12,232,113
Effective search space: 746158893
Effective search space used: 746158893
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)