BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0445500 Os09g0445500|AK120514
(296 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0445500 Zinc finger, C2H2-type domain containing protein 306 1e-83
Os08g0463500 Zinc finger, C2H2-type domain containing protein 97 1e-20
Os03g0216000 Similar to Zinc-finger protein KNUCKLES 91 1e-18
Os02g0775600 Zinc finger, C2H2-type domain containing protein 88 1e-17
Os06g0206500 77 1e-14
Os01g0512700 Zinc finger, C2H2-type domain containing protein 68 9e-12
>Os09g0445500 Zinc finger, C2H2-type domain containing protein
Length = 296
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/296 (58%), Positives = 172/296 (58%)
Query: 1 MSEHDAKHVGDVPAAAGIESFSQLPFVRXXXXXXXXXXXXXXIRLFGFELPPDGVVSAAX 60
MSEHDAKHVGDVPAAAGIESFSQLPFVR IRLFGFELPPDGVVSAA
Sbjct: 1 MSEHDAKHVGDVPAAAGIESFSQLPFVRPRPAAMAGSSPASSIRLFGFELPPDGVVSAAG 60
Query: 61 XXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQFQXXXXXXXXXXXXX 120
RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQFQ
Sbjct: 61 LGGGGGGGGRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQFQSAMAMHAHYPAYP 120
Query: 121 XXXXXXGSHRFGXXXXXXXXXXXXXXXXXXXXXXLPPGGPAPMVAARYYGPAPPGSVSHP 180
GSHRFG LPPGGPAPMVAARYYGPAPPGSVSHP
Sbjct: 121 AYASYYGSHRFGPSPPHMAPPPPPPYPSWSNHHHLPPGGPAPMVAARYYGPAPPGSVSHP 180
Query: 181 INGSXXXXXXXXXXXXXXXXXXXXXXXXXXXRQERQPPLSLAGGREEEDAMVEXXXXXXX 240
INGS RQERQPPLSLAGGREEEDAMVE
Sbjct: 181 INGSPVVPAAAALWRVPAAAIAVAAAAAPLARQERQPPLSLAGGREEEDAMVEVRRGNGV 240
Query: 241 XXXXXXXXQLQPGXXXXXXXXXXXXXXXXXQHHHERRRLGDLAEINRENVSLDLTL 296
QLQPG QHHHERRRLGDLAEINRENVSLDLTL
Sbjct: 241 GGAAAAVVQLQPGSRLSRSSSSSSSASSSSQHHHERRRLGDLAEINRENVSLDLTL 296
>Os08g0463500 Zinc finger, C2H2-type domain containing protein
Length = 300
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 60/122 (49%), Gaps = 32/122 (26%)
Query: 18 IESFSQLPFVRXXXXXXXXXXXXXX--------IRLFGFELPPDGVVSA----------- 58
I+SFSQLPF+R IRLFGF++PPD +A
Sbjct: 13 IDSFSQLPFIRQAAREKPPSSSSGGSVVVPPAPIRLFGFDVPPDASTTADVLGENKESAA 72
Query: 59 -------------AXXXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQ 105
RKFECHYCCRNFPTSQALGGHQNAHKRERQ AK AQ
Sbjct: 73 AVVAAEGSKQTASGLDAIGGGGGSRKFECHYCCRNFPTSQALGGHQNAHKRERQRAKHAQ 132
Query: 106 FQ 107
FQ
Sbjct: 133 FQ 134
>Os03g0216000 Similar to Zinc-finger protein KNUCKLES
Length = 297
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 61/115 (53%), Gaps = 24/115 (20%)
Query: 16 AGIESFSQLPFVRXXXXXXXXXXXXXXIRLFGFELP-----PDGVVS------------- 57
A + SFS+LPF+R IRLFG ++P PDG S
Sbjct: 23 ANVASFSELPFLRPAPAPRESPNNSA-IRLFGIDVPHASSSPDGKASKESVVVSTAAAAA 81
Query: 58 -----AAXXXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQFQ 107
AA RKFECHYCCR+FPTSQALGGHQNAHKRERQHAKR Q Q
Sbjct: 82 STHGAAAAAIAAAADSSRKFECHYCCRHFPTSQALGGHQNAHKRERQHAKRVQMQ 136
>Os02g0775600 Zinc finger, C2H2-type domain containing protein
Length = 279
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 57/118 (48%), Gaps = 30/118 (25%)
Query: 18 IESFSQLPFVRXXXXXXXXXXXXXXIRLFGFELPPD----------GVVSAAXXXX---- 63
++SFSQLPF+R IRLFG E D G AA
Sbjct: 10 VDSFSQLPFIRPAPPPQQQARDT--IRLFGCEFSNDLQLRPTEAGAGSPDAANGSTVTSE 67
Query: 64 --------------XXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQFQ 107
RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRA Q
Sbjct: 68 GSNGGDGGTKNGGAATAAAERKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQ 125
>Os06g0206500
Length = 568
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQFQ 107
R+FECHYC RNFPTSQALGGHQNAHKRERQHA+RA +
Sbjct: 369 RRFECHYCRRNFPTSQALGGHQNAHKRERQHARRAHLE 406
>Os01g0512700 Zinc finger, C2H2-type domain containing protein
Length = 242
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 31/38 (81%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQFQ 107
R+FEC YCCR F SQALGGHQNAHK+ERQ KRA+ Q
Sbjct: 69 RRFECQYCCREFANSQALGGHQNAHKKERQQLKRARLQ 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,069,153
Number of extensions: 176526
Number of successful extensions: 612
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 608
Number of HSP's successfully gapped: 7
Length of query: 296
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 196
Effective length of database: 11,814,401
Effective search space: 2315622596
Effective search space used: 2315622596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)