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Os09g0445500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.43 (0.0357) R2 : 0.665
β1 : -0.777 (0.131) R2dD : 0.0279 R2D : -0.0331
β2 : 2.26 (0.0918) R2dC : 0.477 R2C : 0.273
β3 : -1.44 (0.0856) R2dE : 0.222 R2E : 0.0484
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.952 (0.0763) R2dN8 : 0.154 R2N8 : 0.0996
σ : 0.668
deviance : 205.92
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_____
C
peak time of C : 3.21
E
wheather : humidity
threshold : 45.22
memory length : 60
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 15.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.56 0.649 6.44 -0.806 2.33 -1.53 1.36 1.06 -0.974 3.12 46.64 69 12 15.5
194.32 0.649 6.43 -0.726 2.32 -1.59 1.96 -- -0.939 2.92 44.65 61 12.1 15.5
195.24 0.651 6.43 -0.845 2.39 -1.5 -- 1.62 -0.99 3.26 50.85 57 12.1 15.5
205.92 0.668 6.43 -0.777 2.26 -1.44 -- -- -0.952 3.21 45.22 60 12 15.4
346.97 0.872 6.47 -0.772 -- -1.6 -- 0.204 -1.08 -- -27.18 140 10.7 15.6
241.22 0.728 6.41 -0.743 2.39 -- 0.651 -- -1.01 5.3 -- -- -- --
242.23 0.729 6.41 -0.741 2.39 -- -- -- -1.01 5.35 -- -- -- --
236.61 0.716 6.37 -0.642 -- -2.29 -- -- -0.969 -- -40.17 525 6.73 13
222.29 0.694 6.41 -- 2.28 -1.36 -- -- -0.882 3.41 48.67 52 12.1 15.5
540.83 1.09 6.44 -0.66 -- -- -- -- -0.949 -- -- -- -- --
256.71 0.749 6.39 -- 2.38 -- -- -- -0.925 5.36 -- -- -- --
231.21 0.708 6.43 -- -- -3.11 -- -- -0.932 -- -42.07 600 5.58 13.8
552.31 1.1 6.42 -- -- -- -- -- -0.876 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.95 humidity 50.0 90 > th dose dependent rect. 12 15
13 201.07 humidity 50.0 90 > th dose dependent rect. 15 12
18 202.02 temperature 30.0 90 < th dose independent rect. 12 15
24 202.30 humidity 70.0 90 > th dose independent rect. 12 15
52 204.28 humidity 50.0 720 > th dose dependent rect. 22 19
53 204.35 humidity 50.0 10 > th dose dependent rect. 7 21
73 205.68 humidity 70.0 10 > th dose dependent rect. 7 21
76 205.94 atmosphere 1000.0 10 > th dose independent rect. 12 16
80 206.03 precipitation 0.1 720 < th dose independent rect. 24 15
81 206.03 precipitation 0.1 720 < th dose dependent rect. 24 15
91 206.28 humidity 70.0 30 > th dose dependent rect. 22 6
99 206.52 humidity 50.0 720 > th dose dependent rect. 21 13
102 206.58 atmosphere 1000.0 10 > th dose independent rect. 22 6
114 206.92 humidity 50.0 10 > th dose dependent rect. 9 19
115 206.93 wind 7.0 270 < th dose independent rect. 15 14
118 207.00 precipitation 0.1 720 < th dose independent rect. 3 9
119 207.00 precipitation 0.1 720 < th dose dependent rect. 3 9
125 207.17 humidity 80.0 10 > th dose independent rect. 22 6
130 207.31 humidity 70.0 90 > th dose independent rect. 15 12
136 207.45 radiation 30.0 720 < th dose independent rect. 14 10
150 207.74 radiation 10.0 30 < th dose dependent rect. 6 22
156 207.91 precipitation 0.1 270 < th dose independent rect. 16 13
157 207.91 precipitation 0.1 270 < th dose dependent rect. 16 13
161 208.11 radiation 40.0 90 < th dose dependent rect. 12 15
166 208.22 temperature 30.0 720 < th dose independent rect. 12 5
173 208.31 temperature 30.0 720 < th dose independent rect. 5 5
195 208.64 humidity 50.0 720 > th dose dependent rect. 16 18
222 209.02 wind 1.0 720 > th dose independent rect. 10 10
229 209.13 precipitation 0.1 720 < th dose independent rect. 18 18
230 209.13 precipitation 0.1 720 < th dose dependent rect. 18 18
252 209.44 radiation 30.0 720 < th dose independent rect. 14 3
254 209.48 temperature 30.0 720 < th dose independent rect. 15 2
258 209.50 radiation 1.0 10 < th dose independent rect. 6 22
274 209.64 humidity 60.0 14400 < th dose independent rect. 12 1
276 209.66 radiation 1.0 10 < th dose independent rect. 11 17
303 209.98 precipitation 0.1 10 < th dose independent rect. 4 18
304 209.98 precipitation 0.1 10 < th dose dependent rect. 4 18
307 210.02 temperature 30.0 720 < th dose independent rect. 21 13
316 210.10 temperature 10.0 10 > th dose dependent rect. 22 6
321 210.14 wind 9.0 10 < th dose independent rect. 4 18
330 210.25 humidity 60.0 14400 > th dose independent rect. 11 2
335 210.30 wind 1.0 43200 > th dose dependent rect. 5 1
341 210.32 wind 9.0 43200 < th dose dependent rect. 5 1
347 210.36 radiation 40.0 720 < th dose independent rect. 5 5
355 210.41 radiation 30.0 720 < th dose independent rect. 22 11
356 210.41 humidity 50.0 720 > th dose dependent rect. 5 5
372 210.48 radiation 1.0 10 < th dose independent rect. 13 15
374 210.48 radiation 1.0 10 < th dose dependent rect. 11 17
382 210.51 radiation 40.0 720 < th dose independent rect. 22 19
383 210.51 humidity 50.0 14400 > th dose dependent rect. 13 2
396 210.59 wind 9.0 10 < th dose independent rect. 22 6
397 210.59 temperature 10.0 10 > th dose independent rect. 22 6
398 210.59 temperature 30.0 10 < th dose independent rect. 22 6
399 210.59 humidity 50.0 10 > th dose independent rect. 22 6
403 210.59 radiation 1.0 10 < th dose independent rect. 22 6
409 210.59 temperature 10.0 10 > th dose independent rect. 4 18
411 210.59 atmosphere 1015.0 10 < th dose independent rect. 4 18
412 210.59 radiation 1.0 10 < th dose dependent rect. 22 6
425 210.61 humidity 50.0 14400 > th dose dependent rect. 10 7
431 210.63 temperature 30.0 720 < th dose independent rect. 22 19
451 210.72 temperature 30.0 720 < th dose independent rect. 6 18
470 210.79 radiation 10.0 30 < th dose dependent rect. 13 15
471 210.80 humidity 90.0 14400 < th dose dependent rect. 14 1
482 210.85 wind 3.0 43200 > th dose independent rect. 5 1
486 210.87 humidity 60.0 720 > th dose independent rect. 12 5
487 210.87 radiation 1.0 10 < th dose independent rect. 15 13
519 210.91 humidity 90.0 14400 < th dose dependent rect. 10 7
523 210.93 radiation 40.0 720 < th dose dependent rect. 15 2
526 210.94 humidity 50.0 720 > th dose dependent rect. 5 12
541 211.00 wind 7.0 720 < th dose independent rect. 17 5
542 211.00 atmosphere 995.0 270 > th dose independent rect. 5 11
561 211.05 wind 3.0 43200 < th dose independent rect. 5 1
572 211.07 humidity 50.0 720 > th dose dependent sin 9 NA
576 211.08 humidity 50.0 720 > th dose dependent rect. 5 10
587 211.11 humidity 60.0 14400 > th dose dependent rect. 10 1
617 211.20 humidity 70.0 720 > th dose independent rect. 22 19
635 211.27 radiation 30.0 720 < th dose independent rect. 6 3
645 211.29 humidity 70.0 14400 > th dose independent rect. 9 3
667 211.37 radiation 40.0 720 < th dose independent rect. 12 6
671 211.38 humidity 60.0 720 > th dose independent rect. 6 18
678 211.40 wind 5.0 43200 < th dose dependent rect. 4 3
679 211.40 wind 9.0 43200 < th dose dependent rect. 4 3
689 211.43 humidity 70.0 14400 > th dose independent rect. 19 18
703 211.46 wind 1.0 43200 > th dose dependent rect. 4 3
728 211.52 precipitation 0.1 14400 > th dose independent rect. 15 1
730 211.52 precipitation 0.1 14400 > th dose dependent rect. 15 1
767 211.59 precipitation 0.1 14400 < th dose independent rect. 15 1
769 211.59 precipitation 0.1 14400 < th dose dependent rect. 15 1
799 211.64 humidity 80.0 14400 > th dose independent rect. 8 10
804 211.64 radiation 1.0 10 < th dose dependent rect. 15 13
819 211.67 humidity 70.0 14400 < th dose independent rect. 18 19
829 211.69 wind 3.0 43200 < th dose independent rect. 5 3
844 211.70 humidity 90.0 1440 < th dose dependent rect. 21 20
848 211.71 wind 1.0 270 > th dose independent rect. 15 14
856 211.72 humidity 50.0 720 > th dose dependent rect. 6 3
874 211.76 wind 3.0 43200 > th dose independent rect. 5 3
891 211.78 precipitation 0.1 30 < th dose independent rect. 22 6
893 211.78 humidity 70.0 14400 > th dose independent rect. 2 11
894 211.78 humidity 70.0 14400 > th dose independent rect. 23 14
897 211.78 precipitation 0.1 30 < th dose dependent rect. 22 6
938 211.83 wind 3.0 43200 > th dose independent rect. 7 1
965 211.87 humidity 50.0 14400 > th dose dependent sin 23 NA
971 211.89 temperature 15.0 270 > th dose independent rect. 5 10
979 211.90 humidity 50.0 1440 > th dose dependent no NA NA
991 211.92 humidity 70.0 14400 < th dose independent rect. 8 5
993 211.92 precipitation 0.1 720 < th dose independent rect. 24 6
996 211.92 precipitation 0.1 720 < th dose dependent rect. 24 6