BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0445500 Os09g0445500|AK120514
(296 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41940.1 | chr2:17507556-17508329 FORWARD LENGTH=258 81 5e-16
AT3G58070.1 | chr3:21506845-21507606 REVERSE LENGTH=254 72 3e-13
AT5G06650.1 | chr5:2043486-2044061 FORWARD LENGTH=192 72 5e-13
AT1G68360.1 | chr1:25621678-25622412 REVERSE LENGTH=245 68 5e-12
AT1G67030.1 | chr1:25016644-25017237 FORWARD LENGTH=198 66 3e-11
AT1G80730.1 | chr1:30339493-30340179 REVERSE LENGTH=229 60 2e-09
AT1G66140.1 | chr1:24620063-24620845 REVERSE LENGTH=261 58 5e-09
AT1G24625.1 | chr1:8726009-8726638 REVERSE LENGTH=210 58 8e-09
AT5G10970.1 | chr5:3469268-3470086 FORWARD LENGTH=273 57 1e-08
AT5G25160.1 | chr5:8687524-8688231 FORWARD LENGTH=236 57 1e-08
AT5G14010.1 | chr5:4522260-4522745 FORWARD LENGTH=162 54 8e-08
AT5G27880.1 | chr5:9885908-9886744 FORWARD LENGTH=279 52 3e-07
AT5G57520.1 | chr5:23296019-23296471 FORWARD LENGTH=151 52 4e-07
AT5G01860.1 | chr5:335630-336277 FORWARD LENGTH=216 52 4e-07
>AT2G41940.1 | chr2:17507556-17508329 FORWARD LENGTH=258
Length = 257
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 54/115 (46%), Gaps = 31/115 (26%)
Query: 16 AGIESFSQLPFVRXXXXXXXXXXXXXXIRLFGFEL-----------PPDGVVSAAXXXXX 64
+ESFSQLPF+R IRLFG EL P D +
Sbjct: 16 VNVESFSQLPFIRRTPPKEKAAI----IRLFGQELVGDNSDNLSAEPSDHQTTTKNDESS 71
Query: 65 XX----------------XXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKR 103
R+FECHYC RNFPTSQALGGHQNAHKRERQHAKR
Sbjct: 72 ENIKDKDKEKDKDKDKDNNNNRRFECHYCFRNFPTSQALGGHQNAHKRERQHAKR 126
>AT3G58070.1 | chr3:21506845-21507606 REVERSE LENGTH=254
Length = 253
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 52/113 (46%), Gaps = 31/113 (27%)
Query: 18 IESFSQLPFVRXXXXXXXXXXXXXXIRLFGFELPP-DGVVSAA----------------- 59
+ESFSQLPF+R IR+FG + D ++
Sbjct: 16 VESFSQLPFIRRPKDKNPKP-----IRVFGKDFTGRDFSITTGQEDYTDPYQTKNKEEEE 70
Query: 60 --------XXXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRA 104
R+FECHYC RNFPTSQALGGHQNAHKRERQ AKR
Sbjct: 71 EEDQTGDNSTDNNSISHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRG 123
>AT5G06650.1 | chr5:2043486-2044061 FORWARD LENGTH=192
Length = 191
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 43 IRLFGFELPPDGVVSAAXXXXXXXXXX-------RKFECHYCCRNFPTSQALGGHQNAHK 95
IRLFGFE S + ++F+CHYC RNFPTSQALGGHQNAHK
Sbjct: 19 IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78
Query: 96 RERQHAKR 103
RERQ KR
Sbjct: 79 RERQQTKR 86
>AT1G68360.1 | chr1:25621678-25622412 REVERSE LENGTH=245
Length = 244
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 31/38 (81%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQFQ 107
RK+EC YCCR F SQALGGHQNAHK+ERQ KRAQ Q
Sbjct: 71 RKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQ 108
>AT1G67030.1 | chr1:25016644-25017237 FORWARD LENGTH=198
Length = 197
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 43 IRLFGFELPPDGVV----SAAXXXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRER 98
++LFG L V S RK+EC YCCR F SQALGGHQNAHK+ER
Sbjct: 8 LKLFGINLLETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKER 67
Query: 99 QHAKRAQF 106
Q KRAQ
Sbjct: 68 QLLKRAQM 75
>AT1G80730.1 | chr1:30339493-30340179 REVERSE LENGTH=229
Length = 228
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 29/37 (78%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQF 106
R F C+YC R F +SQALGGHQNAHKRER AKR Q+
Sbjct: 66 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQY 102
>AT1G66140.1 | chr1:24620063-24620845 REVERSE LENGTH=261
Length = 260
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 28/35 (80%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRA 104
R F C+YC R F +SQALGGHQNAHKRER AKRA
Sbjct: 83 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRA 117
>AT1G24625.1 | chr1:8726009-8726638 REVERSE LENGTH=210
Length = 209
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 28/35 (80%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRA 104
R F C+YC R F +SQALGGHQNAHKRER AKRA
Sbjct: 57 RVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRA 91
>AT5G10970.1 | chr5:3469268-3470086 FORWARD LENGTH=273
Length = 272
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 28/36 (77%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQ 105
+ F C+YC R F +SQALGGHQNAHKRER AKR Q
Sbjct: 102 KLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQ 137
>AT5G25160.1 | chr5:8687524-8688231 FORWARD LENGTH=236
Length = 235
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 28/36 (77%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQ 105
+ F C+YC R F +SQALGGHQNAHKRER AKR Q
Sbjct: 59 KLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQ 94
>AT5G14010.1 | chr5:4522260-4522745 FORWARD LENGTH=162
Length = 161
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 26/34 (76%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKR 103
R F C YC R F TSQALGGHQNAHKRER A+R
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69
>AT5G27880.1 | chr5:9885908-9886744 FORWARD LENGTH=279
Length = 278
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 72 FECHYCCRNFPTSQALGGHQNAHKRERQHAKR 103
+ CH+C + F TSQALGGHQNAHK+ER+ K+
Sbjct: 80 YTCHFCKKGFSTSQALGGHQNAHKQEREWDKK 111
>AT5G57520.1 | chr5:23296019-23296471 FORWARD LENGTH=151
Length = 150
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQ 105
R F C+YC R F +SQALGGHQNAHK ER AK+++
Sbjct: 50 RVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSR 85
>AT5G01860.1 | chr5:335630-336277 FORWARD LENGTH=216
Length = 215
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 70 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKR 103
R F C +C + F TSQALGGHQNAHK+ER AKR
Sbjct: 65 RVFACTFCKKEFSTSQALGGHQNAHKQERSLAKR 98
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,923,765
Number of extensions: 89518
Number of successful extensions: 317
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 16
Length of query: 296
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,419,801
Effective search space: 1667120598
Effective search space used: 1667120598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)