BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0439000 Os09g0439000|Os09g0439000
         (966 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0439000  Sterile alpha motif SAM domain containing protein  1756   0.0  
Os04g0401800  DNA repair metallo-beta-lactamase domain conta...   274   2e-73
Os08g0107600  DNA repair metallo-beta-lactamase domain conta...    97   5e-20
Os01g0783400  Conserved hypothetical protein                       71   4e-12

>Os09g0439000 Sterile alpha motif SAM domain containing protein
          Length = 966

 Score = 1756 bits (4547), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 853/934 (91%), Positives = 853/934 (91%)

Query: 33  LGAGYRXXXXXXXXFQXXXXXXXXXXXXLKPSGNGAAXXXXXXXXXXXXXXXXGKENRXX 92
           LGAGYR        FQ            LKPSGNGAA                GKENR  
Sbjct: 33  LGAGYRDNDDDDDDFQSPPRASSRAARALKPSGNGAASRRPSKRLKPSSSCCSGKENRPA 92

Query: 93  XXXXXXXXXXXXXXXXXXVGETLXXXXXXXXXXXXXDKAXXXXXXXXXXXXSDDFSSVSN 152
                             VGETL             DKA            SDDFSSVSN
Sbjct: 93  AAGSGRAPAGRAASKGAGVGETLGVVSRVSSGVPGGDKARGGGICGLLRCGSDDFSSVSN 152

Query: 153 GKKGLDRYWRRDGGLHSRPNPMDSTVSMPDATCDLENGGSQVAQMLSSNDRISVQLEGNA 212
           GKKGLDRYWRRDGGLHSRPNPMDSTVSMPDATCDLENGGSQVAQMLSSNDRISVQLEGNA
Sbjct: 153 GKKGLDRYWRRDGGLHSRPNPMDSTVSMPDATCDLENGGSQVAQMLSSNDRISVQLEGNA 212

Query: 213 KVELGKSESDPTTMRKERNGSGACESDHPARLIEPRLLTLVTNCDFGGADSMDSKELGSA 272
           KVELGKSESDPTTMRKERNGSGACESDHPARLIEPRLLTLVTNCDFGGADSMDSKELGSA
Sbjct: 213 KVELGKSESDPTTMRKERNGSGACESDHPARLIEPRLLTLVTNCDFGGADSMDSKELGSA 272

Query: 273 IHPSVSKDRNVENESGGASVCTFALHNRNCHSSCVESELEMLNAKYDLGPRDCKESQEGP 332
           IHPSVSKDRNVENESGGASVCTFALHNRNCHSSCVESELEMLNAKYDLGPRDCKESQEGP
Sbjct: 273 IHPSVSKDRNVENESGGASVCTFALHNRNCHSSCVESELEMLNAKYDLGPRDCKESQEGP 332

Query: 333 GLCSLISEERTVAAEGDATFTFEERGNTSSGLEACKGSHCLDPVEPKLMDSCATHALEGD 392
           GLCSLISEERTVAAEGDATFTFEERGNTSSGLEACKGSHCLDPVEPKLMDSCATHALEGD
Sbjct: 333 GLCSLISEERTVAAEGDATFTFEERGNTSSGLEACKGSHCLDPVEPKLMDSCATHALEGD 392

Query: 393 GCDDFEIGTQLNELINLCMEDYTEGPLSNKVACLEGNGMDCGSFNSSCEVQCPLCGSNIS 452
           GCDDFEIGTQLNELINLCMEDYTEGPLSNKVACLEGNGMDCGSFNSSCEVQCPLCGSNIS
Sbjct: 393 GCDDFEIGTQLNELINLCMEDYTEGPLSNKVACLEGNGMDCGSFNSSCEVQCPLCGSNIS 452

Query: 453 DLSEELRLVHTNSCLDGDKPAKEPNSDNQNEPCGESNVEKRRVMEWLRNLGLSKYEEIFI 512
           DLSEELRLVHTNSCLDGDKPAKEPNSDNQNEPCGESNVEKRRVMEWLRNLGLSKYEEIFI
Sbjct: 453 DLSEELRLVHTNSCLDGDKPAKEPNSDNQNEPCGESNVEKRRVMEWLRNLGLSKYEEIFI 512

Query: 513 KEEVDWETLQWLTEEDLLGMGITSLGPRKKIAHALCELRKKNNDANDLAADMLNLENTKK 572
           KEEVDWETLQWLTEEDLLGMGITSLGPRKKIAHALCELRKKNNDANDLAADMLNLENTKK
Sbjct: 513 KEEVDWETLQWLTEEDLLGMGITSLGPRKKIAHALCELRKKNNDANDLAADMLNLENTKK 572

Query: 573 AKIPMNGNKLITEYFRCPSSDQRQKKACKVNTPSNLNSQKKSNAKATGGRRTVKGKVKDT 632
           AKIPMNGNKLITEYFRCPSSDQRQKKACKVNTPSNLNSQKKSNAKATGGRRTVKGKVKDT
Sbjct: 573 AKIPMNGNKLITEYFRCPSSDQRQKKACKVNTPSNLNSQKKSNAKATGGRRTVKGKVKDT 632

Query: 633 PIWCCIPGTPFRVDAFRYLRGDCCHWFLTHFHVDHYQGLTKSFCHGKIYCSSVTANLVHY 692
           PIWCCIPGTPFRVDAFRYLRGDCCHWFLTHFHVDHYQGLTKSFCHGKIYCSSVTANLVHY
Sbjct: 633 PIWCCIPGTPFRVDAFRYLRGDCCHWFLTHFHVDHYQGLTKSFCHGKIYCSSVTANLVHY 692

Query: 693 KIGIPWDRLHVLPLNEKITIAGVNLTCFDANHCPGAVIILFEPSNGKAVLHTGDFRFSSE 752
           KIGIPWDRLHVLPLNEKITIAGVNLTCFDANHCPGAVIILFEPSNGKAVLHTGDFRFSSE
Sbjct: 693 KIGIPWDRLHVLPLNEKITIAGVNLTCFDANHCPGAVIILFEPSNGKAVLHTGDFRFSSE 752

Query: 753 MANNRVLQSSPIHTLILDTTYCNPRYDFPTQEIVIQFVIEAIQAEAFNPKTLFLIGSYTI 812
           MANNRVLQSSPIHTLILDTTYCNPRYDFPTQEIVIQFVIEAIQAEAFNPKTLFLIGSYTI
Sbjct: 753 MANNRVLQSSPIHTLILDTTYCNPRYDFPTQEIVIQFVIEAIQAEAFNPKTLFLIGSYTI 812

Query: 813 GKERLYMEVARLLQKKIYVGAAKLQILKHLGLPQEIMHWFTANEAESHIHVVPMWTLASF 872
           GKERLYMEVARLLQKKIYVGAAKLQILKHLGLPQEIMHWFTANEAESHIHVVPMWTLASF
Sbjct: 813 GKERLYMEVARLLQKKIYVGAAKLQILKHLGLPQEIMHWFTANEAESHIHVVPMWTLASF 872

Query: 873 KRMKYLSTQYADRFDLIVAFCPTGWSFGKGKKRTPGRKWQQGAIIRYEVPYSEHSSFTEL 932
           KRMKYLSTQYADRFDLIVAFCPTGWSFGKGKKRTPGRKWQQGAIIRYEVPYSEHSSFTEL
Sbjct: 873 KRMKYLSTQYADRFDLIVAFCPTGWSFGKGKKRTPGRKWQQGAIIRYEVPYSEHSSFTEL 932

Query: 933 REFVRFISPEHIIPSVNNDGPDSANAMLAQLLND 966
           REFVRFISPEHIIPSVNNDGPDSANAMLAQLLND
Sbjct: 933 REFVRFISPEHIIPSVNNDGPDSANAMLAQLLND 966



>Os04g0401800 DNA repair metallo-beta-lactamase domain containing protein
          Length = 481

 Score =  274 bits (701), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/338 (43%), Positives = 208/338 (61%), Gaps = 12/338 (3%)

Query: 633 PIWCCIPGTPFRVDAFRYLRGDCCH-WFLTHFHVDHYQGLTKSFCHGKIYCSSVTANLVH 691
           P +  IPGTPF VDAFRY   + C+ +FL+HFH DHY GLTK +CHG IYC+++TA LV 
Sbjct: 142 PFYKKIPGTPFTVDAFRYGAVEGCNAYFLSHFHHDHYGGLTKKWCHGPIYCTALTARLVK 201

Query: 692 YKIGIPWDRLHVLPLNEKITIAGVNLTCFDANHCPGAVIILFEPSNGKAVLHTGDFRFSS 751
             + +  + +  L L+++  I GV++T  +ANHCPGA +I F   +GK  LHTGDFR S 
Sbjct: 202 MCLSVNPEYICPLELDKEYVIEGVSVTLLEANHCPGAALIHFRLGDGKKYLHTGDFRASK 261

Query: 752 EMANNRVLQSSPIHTLILDTTYCNPRYDFPTQEIVIQFVIEA----IQAEAFNPKTLFLI 807
            M    +LQ   I+ L LDTTYCNP+Y FP +E VI F +      +Q E   PKTL ++
Sbjct: 262 SMQLYPLLQRGQINLLYLDTTYCNPKYKFPPKEDVIDFAVRTAKRYLQKE---PKTLIVV 318

Query: 808 GSYTIGKERLYMEVARLLQKKIYVGAAKLQILKHLGLPQEIMHWFTANEAESHIHVVPMW 867
           G+Y+IGKE +Y+ +++ LQ  IY  A++ +IL   G   ++     ++   S +HV+P+ 
Sbjct: 319 GAYSIGKENVYLAISKALQVPIYTDASRRRILHAFGW-SDLSKMICSDSQSSSLHVLPLS 377

Query: 868 TLASFKRMKYLSTQYADRFDLIVAFCPTGWSFGK--GKKRTPGRKWQQGAIIRYEVPYSE 925
           +L      KYL T    RF  ++AF PTGW+F +  G +    +   +G I  Y VPYSE
Sbjct: 378 SLRHENLQKYLET-LKQRFLAVLAFRPTGWTFSEETGNQLDLIKPSSRGKITIYGVPYSE 436

Query: 926 HSSFTELREFVRFISPEHIIPSVNNDGPDSANAMLAQL 963
           HSSF+ELREFV F+ P+ +IP+VN     S + M A  
Sbjct: 437 HSSFSELREFVMFLRPQKVIPTVNVGNAASRDKMQAHF 474



>Os08g0107600 DNA repair metallo-beta-lactamase domain containing protein
          Length = 663

 Score = 97.4 bits (241), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 145/320 (45%), Gaps = 27/320 (8%)

Query: 640 GTPFRVDAFRYLRGDCCHWFLTHFHVDHYQGLTKSFCHGKIYCSSVTANLVHYKIGIPWD 699
           G PF VD +        H FLTH H DH  G+T +     +Y S +T  L+   I    D
Sbjct: 8   GLPFAVDTWTAASAVKRHRFLTHAHRDHIAGITATNV-AAVYASRLTI-LIACHIFPQLD 65

Query: 700 RLHV---LPLNEKITI----AGVNLTCFDANHCPGAVIILFEPSNGKAVLHTGDFRFSSE 752
           R      + L   + +        +T FDANHCPGAV+ LFE ++   VLHTGD R + +
Sbjct: 66  RADAFVEVELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGASFGRVLHTGDCRLTPD 125

Query: 753 MANNRVLQSSPIHTLILDTTYCNPRYDFPTQEIVIQFVIEAIQAEAFNPKTLFLIGSYTI 812
               R L +     + LD T+      FP+++  I+ VI  I     N   ++L+ S  +
Sbjct: 126 F---RFLAAD---YVFLDCTFAACSLHFPSKDDSIRQVINCIWKHP-NAPVVYLV-SDML 177

Query: 813 GKERLYMEVARLLQKKIYVGAAKLQILKH-LGLPQEIMHWFTANEAESHIHVVPMWTLAS 871
           G+E + MEV+++   KIYV   K     H L L   +      +++ S   V+    L+ 
Sbjct: 178 GQEEILMEVSKVFGSKIYVDRDKNSECYHTLSL---VAPEILTDDSSSRFQVIGFPRLSE 234

Query: 872 -FKRMKYLSTQYADRFDLIVAFCPTGWSFGKGKKRTPGRKWQQGAIIR-----YEVPYSE 925
               M  L+        LI+      +++ +  + +  RK      +R     + V +S 
Sbjct: 235 RATEMLALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPALTEPMRDEFGVWHVCFSM 294

Query: 926 HSSFTELREFVRFISPEHII 945
           HSS  EL + +RFI P+ +I
Sbjct: 295 HSSREELEQALRFIQPKWVI 314



>Os01g0783400 Conserved hypothetical protein
          Length = 217

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 75/167 (44%), Gaps = 25/167 (14%)

Query: 645 VDAFRYLRGDCCHWFLTHFHVDHYQGLTKS--FCHGKIYCSSVTANLVHYKI-GIPWDRL 701
           VD F    G    +FLTH H DH +GL  +  + HG +YCS VTA L+  +  G+    L
Sbjct: 37  VDKFS---GGSQAYFLTHLHQDHTRGLGAAGGWRHGPLYCSPVTARLLPTRFPGVDASLL 93

Query: 702 HVLPLNEKIT----------IAGVNLTCFDANHCPGAVIILFEPSNGKAVLHTGDFRFSS 751
             L      +             V +T   A HCPG+++ LF    G  +L+TGDFR+  
Sbjct: 94  RPLAPGASASLSLSSPSTGRAVSVVVTAIPALHCPGSLMYLFRGDLG-CMLYTGDFRWEL 152

Query: 752 EMANNRV--------LQSSPIHTLILDTTYCNPRYDFPTQEIVIQFV 790
                R         L    +  L LD TYC+P   FP + IV + V
Sbjct: 153 RCKRARAAKKALLDALAGDTVDVLYLDNTYCHPSLSFPPRPIVAEQV 199



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,330,779
Number of extensions: 1383961
Number of successful extensions: 3095
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3084
Number of HSP's successfully gapped: 4
Length of query: 966
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 856
Effective length of database: 11,292,261
Effective search space: 9666175416
Effective search space used: 9666175416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)