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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0107600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA repair metallo-beta-lactamase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.75 (0.0208) R2 : 0.0177
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.126 (0.0438) R2dN8 : 0.0229 R2N8 : 0.0177
σ : 0.392
deviance : 70.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.47 0.386 2.78 0.239 0.0909 -1.34 -0.126 -6.26 0.133 2.63 8.6 804 -- --
69.17 0.39 2.74 0.162 0.1 -0.019 -0.0566 -- 0.142 2.52 8.6 804 -- --
67.53 0.383 2.78 0.242 0.0894 -1.34 -- -6.2 0.133 2.59 8.601 804 -- --
69.05 0.39 2.74 0.173 0.107 -0.126 -- -- 0.147 2.49 8.098 726 -- --
68 0.384 2.78 0.247 -- -1.33 -- -6.01 0.137 -- 8.6 796 -- --
69.17 0.39 2.74 0.161 0.0996 -- -0.0537 -- 0.141 2.51 -- -- -- --
69.18 0.39 2.74 0.162 0.0993 -- -- -- 0.142 2.41 -- -- -- --
69.66 0.389 2.74 0.177 -- -0.193 -- -- 0.149 -- 10.7 405 -- --
69.65 0.389 2.75 -- 0.0869 0.0801 -- -- 0.133 1.93 4.399 340 -- --
69.76 0.39 2.74 0.166 -- -- -- -- 0.144 -- -- -- -- --
69.87 0.391 2.75 -- 0.102 -- -- -- 0.124 2.43 -- -- -- --
69.43 0.388 2.75 -- -- 0.126 -- -- 0.128 -- 3.4 104 -- --
70.49 0.392 2.75 -- -- -- -- -- 0.126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.12 radiation 10.0 10 > th dose independent rect. 6 1
27 66.12 radiation 10.0 10 > th dose dependent rect. 6 1
53 66.20 temperature 20.0 30 > th dose dependent rect. 2 1
54 66.20 atmosphere 1005.0 30 > th dose dependent rect. 2 1
55 66.24 temperature 20.0 30 > th dose independent rect. 2 1
57 66.25 atmosphere 1005.0 30 > th dose independent rect. 2 1
58 66.26 atmosphere 1015.0 90 < th dose independent rect. 22 1
59 66.26 wind 3.0 30 < th dose dependent rect. 2 1
60 66.26 wind 3.0 30 < th dose dependent rect. 6 1
63 66.28 humidity 50.0 720 > th dose independent rect. 23 16
66 66.30 wind 3.0 30 < th dose independent rect. 2 1
67 66.31 humidity 80.0 30 > th dose independent rect. 2 1
71 66.32 temperature 25.0 30 < th dose independent rect. 2 1
76 66.34 temperature 10.0 30 > th dose independent rect. 2 1
79 66.34 humidity 50.0 30 > th dose independent rect. 2 1
83 66.34 atmosphere 1010.0 30 < th dose independent rect. 2 1
85 66.34 radiation 1.0 30 < th dose independent rect. 2 1
90 66.34 precipitation 0.1 30 < th dose independent rect. 2 1
91 66.34 temperature 10.0 30 > th dose independent rect. 3 23
92 66.34 humidity 50.0 30 > th dose dependent rect. 2 1
94 66.34 radiation 1.0 30 < th dose dependent rect. 2 1
99 66.34 precipitation 0.1 30 < th dose dependent rect. 2 1
101 66.35 atmosphere 1005.0 10 > th dose dependent rect. 6 1
103 66.37 wind 5.0 90 < th dose independent rect. 22 1
105 66.38 humidity 80.0 90 > th dose independent rect. 22 1
106 66.39 temperature 20.0 10 < th dose dependent rect. 3 1
109 66.41 atmosphere 1015.0 10 < th dose independent rect. 22 2
110 66.42 humidity 80.0 30 > th dose dependent rect. 6 1
112 66.44 temperature 10.0 90 > th dose dependent rect. 22 1
117 66.47 temperature 10.0 10 > th dose dependent rect. 22 2
118 66.48 wind 9.0 90 < th dose dependent rect. 22 1
121 66.51 humidity 90.0 90 < th dose independent rect. 2 1
124 66.52 temperature 15.0 90 > th dose independent rect. 22 1
125 66.52 humidity 80.0 10 > th dose independent rect. 22 2
127 66.53 temperature 30.0 30 < th dose dependent rect. 6 1
128 66.53 atmosphere 1015.0 30 < th dose dependent rect. 2 1
129 66.54 wind 9.0 30 < th dose independent rect. 3 23
134 66.55 temperature 30.0 90 < th dose independent rect. 22 1
135 66.55 humidity 50.0 90 > th dose independent rect. 22 1
138 66.55 atmosphere 995.0 90 > th dose independent rect. 22 1
139 66.55 radiation 1.0 90 < th dose independent rect. 22 1
144 66.55 temperature 10.0 90 > th dose independent rect. 23 23
145 66.55 temperature 30.0 30 < th dose dependent rect. 2 1
146 66.55 radiation 1.0 90 < th dose dependent rect. 22 1
152 66.56 precipitation 0.1 90 < th dose independent rect. 22 1
153 66.56 precipitation 0.1 90 < th dose dependent rect. 22 1
155 66.56 temperature 10.0 10 > th dose dependent rect. 24 22
156 66.57 wind 7.0 720 < th dose independent rect. 24 15
161 66.61 temperature 10.0 720 > th dose dependent rect. 10 1
162 66.61 humidity 50.0 90 > th dose dependent rect. 22 1
164 66.63 wind 9.0 90 < th dose independent rect. 23 23
165 66.63 wind 7.0 720 < th dose independent rect. 23 23
171 66.66 wind 7.0 10 < th dose independent rect. 24 22
172 66.66 wind 5.0 720 > th dose dependent rect. 13 1
175 66.67 wind 9.0 1440 < th dose independent rect. 13 1
178 66.68 wind 3.0 30 < th dose dependent rect. 9 1
181 66.69 atmosphere 1010.0 10 < th dose independent rect. 24 22
184 66.71 wind 3.0 30 < th dose independent rect. 6 1
185 66.71 temperature 15.0 10 > th dose independent rect. 22 2
190 66.72 wind 7.0 720 > th dose dependent rect. 12 4
195 66.75 atmosphere 1010.0 10 < th dose independent rect. 24 8
200 66.76 wind 1.0 90 > th dose independent rect. 22 1
201 66.76 wind 5.0 720 < th dose independent rect. 22 1
206 66.76 temperature 30.0 10 < th dose independent rect. 22 2
207 66.76 humidity 50.0 10 > th dose independent rect. 22 2
210 66.76 atmosphere 995.0 10 > th dose independent rect. 22 2
211 66.76 radiation 1.0 10 < th dose independent rect. 22 2
216 66.76 precipitation 0.1 10 < th dose independent rect. 22 2
218 66.76 temperature 10.0 10 > th dose independent rect. 24 22
220 66.76 radiation 1.0 10 < th dose dependent rect. 22 2
225 66.76 precipitation 0.1 10 < th dose dependent rect. 22 2
227 66.77 wind 1.0 30 > th dose independent rect. 2 1
228 66.77 wind 3.0 30 < th dose independent rect. 9 1
234 66.77 radiation 10.0 10 < th dose dependent rect. 12 1
241 66.79 humidity 50.0 10 > th dose dependent rect. 22 2
281 66.83 wind 7.0 720 > th dose independent rect. 13 1
285 66.83 temperature 10.0 30 > th dose independent rect. 6 1
287 66.83 temperature 30.0 30 < th dose independent rect. 6 1
288 66.83 humidity 50.0 30 > th dose independent rect. 6 1
292 66.83 atmosphere 995.0 30 > th dose independent rect. 6 1
293 66.83 atmosphere 1015.0 30 < th dose independent rect. 6 1
294 66.83 radiation 20.0 30 < th dose independent rect. 6 1
297 66.83 precipitation 0.1 30 < th dose independent rect. 6 1
299 66.83 wind 1.0 10 > th dose independent rect. 22 2
301 66.83 temperature 10.0 30 > th dose independent rect. 7 23
303 66.83 precipitation 0.1 30 < th dose dependent rect. 6 1
305 66.84 wind 1.0 30 > th dose independent rect. 6 1
307 66.84 wind 9.0 1440 < th dose independent rect. 23 2
308 66.84 temperature 10.0 1440 > th dose independent rect. 23 2
311 66.84 temperature 30.0 1440 < th dose independent rect. 23 2
315 66.84 humidity 50.0 1440 > th dose independent rect. 23 2
325 66.84 atmosphere 995.0 1440 > th dose independent rect. 23 2
326 66.84 radiation 1.0 1440 < th dose independent rect. 23 2
347 66.84 atmosphere 1010.0 10 < th dose independent rect. 17 15
348 66.84 temperature 10.0 1440 > th dose independent rect. 1 22
352 66.84 radiation 1.0 1440 < th dose dependent rect. 23 2
360 66.85 humidity 70.0 90 > th dose independent rect. 21 14
366 66.87 wind 7.0 720 > th dose independent rect. 12 4
367 66.87 humidity 90.0 90 < th dose independent rect. 22 6
368 66.87 wind 7.0 10 < th dose independent rect. 10 12
374 66.88 wind 9.0 1440 < th dose independent rect. 12 3
375 66.88 wind 5.0 30 < th dose independent rect. 22 12
376 66.88 radiation 40.0 10 < th dose dependent rect. 6 1
396 66.89 temperature 25.0 90 > th dose dependent rect. 22 1
401 66.89 temperature 15.0 10 > th dose dependent rect. 24 8
409 66.91 wind 5.0 90 < th dose independent rect. 21 14
410 66.91 wind 7.0 720 < th dose independent rect. 10 19
412 66.91 temperature 10.0 10 > th dose dependent rect. 6 1
416 66.92 wind 9.0 1440 < th dose independent rect. 7 1
417 66.92 temperature 10.0 1440 > th dose independent rect. 7 1
421 66.92 temperature 30.0 1440 < th dose independent rect. 7 1
425 66.92 humidity 50.0 1440 > th dose independent rect. 7 1
430 66.92 humidity 90.0 30 < th dose independent rect. 6 1
431 66.92 atmosphere 995.0 1440 > th dose independent rect. 7 1
432 66.92 atmosphere 1015.0 1440 < th dose independent rect. 7 1
434 66.92 atmosphere 995.0 10 > th dose independent rect. 24 22
435 66.92 temperature 10.0 1440 > th dose independent rect. 8 23
450 66.95 humidity 90.0 90 < th dose independent rect. 22 1
452 66.95 precipitation 0.1 10 < th dose independent rect. 24 22
456 66.95 atmosphere 1015.0 90 < th dose dependent rect. 22 1
457 66.95 precipitation 0.1 10 < th dose dependent rect. 24 22
466 66.96 radiation 40.0 90 < th dose dependent rect. 17 15
470 66.98 atmosphere 1015.0 720 < th dose independent rect. 22 1
486 67.00 wind 7.0 720 < th dose independent rect. 14 8
493 67.01 humidity 50.0 720 > th dose independent rect. 7 8
498 67.02 humidity 60.0 10 > th dose independent rect. 22 12
500 67.02 humidity 50.0 10 > th dose dependent rect. 8 9
505 67.03 wind 1.0 10 > th dose independent rect. 24 22
507 67.03 temperature 10.0 30 > th dose dependent rect. 10 12
509 67.04 humidity 90.0 720 < th dose independent rect. 10 1
510 67.04 radiation 10.0 720 > th dose independent rect. 10 1
511 67.04 radiation 10.0 30 < th dose independent rect. 11 2
514 67.04 wind 7.0 720 < th dose independent rect. 10 9
515 67.04 wind 7.0 90 < th dose independent rect. 11 10
516 67.04 temperature 15.0 270 > th dose independent rect. 5 11
518 67.04 temperature 15.0 270 > th dose independent rect. 16 13
519 67.04 atmosphere 1015.0 30 < th dose independent rect. 8 16
530 67.05 atmosphere 1015.0 270 < th dose independent rect. 5 11
532 67.05 radiation 30.0 270 < th dose independent rect. 16 13
534 67.05 wind 7.0 720 < th dose independent rect. 10 16
535 67.05 humidity 90.0 90 < th dose independent rect. 22 19
536 67.05 atmosphere 995.0 90 > th dose dependent rect. 22 1
541 67.06 wind 9.0 270 < th dose independent rect. 5 11
542 67.06 atmosphere 1015.0 30 < th dose independent rect. 22 12
543 67.06 wind 9.0 270 < th dose independent rect. 16 13
547 67.06 wind 9.0 10 < th dose dependent rect. 22 12
551 67.07 radiation 40.0 720 < th dose independent rect. 15 9
557 67.07 temperature 10.0 10 > th dose dependent rect. 3 19
570 67.10 precipitation 0.1 720 < th dose independent rect. 22 1
574 67.10 precipitation 0.1 720 < th dose dependent rect. 22 1
609 67.12 temperature 15.0 720 > th dose independent rect. 3 9
610 67.12 wind 7.0 720 < th dose independent rect. 10 11
612 67.12 radiation 20.0 90 < th dose independent rect. 17 15
619 67.13 atmosphere 995.0 720 > th dose independent rect. 3 9
621 67.13 temperature 10.0 720 > th dose independent rect. 12 15
630 67.14 atmosphere 1015.0 720 < th dose independent rect. 3 9
631 67.14 wind 9.0 90 < th dose independent rect. 7 10
633 67.14 temperature 10.0 10 > th dose independent rect. 10 12
635 67.14 temperature 10.0 10 > th dose independent rect. 22 12
638 67.14 atmosphere 995.0 10 > th dose independent rect. 22 12
639 67.14 atmosphere 1015.0 10 < th dose independent rect. 10 12
645 67.15 wind 9.0 720 < th dose independent rect. 3 9
646 67.15 temperature 10.0 90 > th dose independent rect. 7 10
647 67.15 atmosphere 1015.0 90 < th dose independent rect. 7 10
656 67.15 wind 9.0 30 < th dose independent rect. 7 23
662 67.16 temperature 20.0 720 > th dose independent rect. 10 1
684 67.16 temperature 10.0 720 > th dose independent rect. 23 23
694 67.17 wind 1.0 720 > th dose independent rect. 10 1
701 67.17 temperature 10.0 720 > th dose independent rect. 15 9
703 67.17 precipitation 0.1 270 < th dose independent rect. 5 11
704 67.17 temperature 10.0 1440 > th dose independent rect. 11 12
707 67.17 temperature 10.0 1440 > th dose independent rect. 23 12
710 67.17 atmosphere 995.0 1440 > th dose independent rect. 23 12
714 67.17 temperature 10.0 720 > th dose independent rect. 24 15
722 67.17 precipitation 0.1 270 < th dose dependent rect. 5 11
723 67.18 wind 9.0 720 < th dose independent rect. 10 1
725 67.18 atmosphere 995.0 720 > th dose independent rect. 10 1
726 67.18 atmosphere 1015.0 720 < th dose independent rect. 10 1
727 67.18 precipitation 0.1 720 < th dose independent rect. 10 1
732 67.18 wind 7.0 720 < th dose independent rect. 9 13
733 67.18 atmosphere 1015.0 720 < th dose independent rect. 24 15
737 67.18 temperature 10.0 720 > th dose independent rect. 11 23
739 67.18 precipitation 0.1 720 < th dose dependent rect. 10 1
742 67.18 radiation 10.0 30 < th dose dependent rect. 24 22
746 67.19 humidity 80.0 90 > th dose independent rect. 21 6
761 67.20 atmosphere 995.0 270 > th dose independent rect. 5 11
763 67.20 precipitation 0.1 30 < th dose independent rect. 22 12
767 67.20 precipitation 0.1 90 < th dose independent rect. 21 14
773 67.20 precipitation 0.1 30 < th dose dependent rect. 22 12
774 67.20 precipitation 0.1 90 < th dose dependent rect. 21 14
780 67.21 temperature 10.0 90 > th dose independent rect. 11 10
782 67.21 atmosphere 1015.0 90 < th dose independent rect. 11 10
783 67.21 radiation 1.0 90 > th dose independent rect. 7 10
785 67.21 temperature 10.0 90 > th dose independent rect. 21 14
787 67.21 atmosphere 995.0 90 > th dose independent rect. 21 14
788 67.21 atmosphere 1015.0 90 < th dose independent rect. 21 14
790 67.21 temperature 15.0 270 > th dose dependent rect. 3 2
791 67.21 temperature 15.0 10 > th dose dependent rect. 3 5
801 67.22 atmosphere 995.0 90 > th dose independent rect. 17 14
802 67.22 wind 7.0 720 < th dose independent rect. 7 15
804 67.22 precipitation 0.1 30 < th dose independent rect. 8 16
812 67.22 precipitation 0.1 30 < th dose dependent rect. 8 16
850 67.24 atmosphere 1015.0 10 < th dose dependent rect. 22 2
851 67.24 humidity 50.0 30 > th dose dependent rect. 24 9
866 67.25 atmosphere 1015.0 30 < th dose dependent rect. 6 1
875 67.26 wind 5.0 90 < th dose independent rect. 21 6
876 67.26 temperature 10.0 1440 > th dose independent rect. 1 8
879 67.26 humidity 50.0 1440 > th dose independent rect. 1 8
881 67.26 atmosphere 995.0 1440 > th dose independent rect. 1 8
884 67.26 precipitation 0.1 10 < th dose independent rect. 10 12
886 67.26 precipitation 0.1 270 < th dose independent rect. 16 13
887 67.26 humidity 50.0 90 > th dose independent rect. 17 14
888 67.26 temperature 10.0 1440 > th dose independent rect. 9 16
899 67.26 precipitation 0.1 10 < th dose dependent rect. 10 12
900 67.26 precipitation 0.1 270 < th dose dependent rect. 16 13
912 67.27 temperature 15.0 30 > th dose independent rect. 8 16
923 67.28 wind 9.0 30 < th dose independent rect. 24 8
924 67.28 temperature 10.0 30 > th dose independent rect. 24 8
926 67.28 temperature 30.0 30 < th dose independent rect. 24 8
927 67.28 humidity 50.0 30 > th dose independent rect. 24 8
929 67.28 atmosphere 995.0 30 > th dose independent rect. 24 8
931 67.28 radiation 10.0 10 < th dose independent rect. 9 8
932 67.28 radiation 30.0 30 < th dose independent rect. 24 8
942 67.28 precipitation 0.1 90 < th dose independent rect. 7 10
955 67.28 precipitation 0.1 90 < th dose dependent rect. 7 10
958 67.29 atmosphere 1015.0 90 < th dose independent rect. 21 6
972 67.29 atmosphere 1010.0 10 < th dose independent rect. 3 19
983 67.30 atmosphere 995.0 90 > th dose independent rect. 7 10
986 67.30 wind 9.0 30 < th dose independent rect. 8 16
988 67.30 atmosphere 1015.0 10 < th dose independent rect. 22 19
992 67.30 temperature 15.0 90 > th dose dependent rect. 3 4
997 67.30 radiation 30.0 10 < th dose dependent rect. 22 19
999 67.31 humidity 50.0 720 > th dose independent rect. 10 1