BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0107600 Os08g0107600|AK119294
(663 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0107600 DNA repair metallo-beta-lactamase domain conta... 1343 0.0
Os01g0881400 Viral capsid/hemagglutinin protein domain cont... 162 1e-39
Os09g0439000 Sterile alpha motif SAM domain containing protein 96 1e-19
Os04g0401800 DNA repair metallo-beta-lactamase domain conta... 82 2e-15
>Os08g0107600 DNA repair metallo-beta-lactamase domain containing protein
Length = 663
Score = 1343 bits (3476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/663 (97%), Positives = 649/663 (97%)
Query: 1 MPIELPRGLPFAVDTWTAASAVKRHRFLTHAHRDHIAGITATNVAAVYASRLTILIACHI 60
MPIELPRGLPFAVDTWTAASAVKRHRFLTHAHRDHIAGITATNVAAVYASRLTILIACHI
Sbjct: 1 MPIELPRGLPFAVDTWTAASAVKRHRFLTHAHRDHIAGITATNVAAVYASRLTILIACHI 60
Query: 61 FPQLDRADAFVEVELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGASFGRVLHTGDC 120
FPQLDRADAFVEVELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGASFGRVLHTGDC
Sbjct: 61 FPQLDRADAFVEVELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGASFGRVLHTGDC 120
Query: 121 RLTPDFRFLAADYVFLDCTFAACSLHFPSKDDSIRQVINCIWKHPNAPVVYLVSDMLGQE 180
RLTPDFRFLAADYVFLDCTFAACSLHFPSKDDSIRQVINCIWKHPNAPVVYLVSDMLGQE
Sbjct: 121 RLTPDFRFLAADYVFLDCTFAACSLHFPSKDDSIRQVINCIWKHPNAPVVYLVSDMLGQE 180
Query: 181 EILMEVSKVFGSKIYVDRDKNSECYHTLSLVAPEILTDDSSSRFQVIGFPRLSERATEML 240
EILMEVSKVFGSKIYVDRDKNSECYHTLSLVAPEILTDDSSSRFQVIGFPRLSERATEML
Sbjct: 181 EILMEVSKVFGSKIYVDRDKNSECYHTLSLVAPEILTDDSSSRFQVIGFPRLSERATEML 240
Query: 241 ALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPALTEPMRDEFGVWHVCFSMHSSREE 300
ALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPALTEPMRDEFGVWHVCFSMHSSREE
Sbjct: 241 ALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPALTEPMRDEFGVWHVCFSMHSSREE 300
Query: 301 LEQALRFIQPKWVISTTPPCMAIELSYVKKHCFASRLRNDDPLWKLLRLSDGNSAVSGSP 360
LEQALRFIQPKWVISTTPPCMAIELSYVKKHCFASRLRNDDPLWKLLRLSDGNSAVSGSP
Sbjct: 301 LEQALRFIQPKWVISTTPPCMAIELSYVKKHCFASRLRNDDPLWKLLRLSDGNSAVSGSP 360
Query: 361 LAVPTVEMIKKCEEEEVTCSVKDSFSSDGIRMRDQEPTLEDFEINVEPPVTLFGIARFGL 420
LAVPTVEMIKKCEEEEVTCSVKDSFSSDGIRMRDQEPTLEDFEINVEPPVTLFGIARFGL
Sbjct: 361 LAVPTVEMIKKCEEEEVTCSVKDSFSSDGIRMRDQEPTLEDFEINVEPPVTLFGIARFGL 420
Query: 421 TEEPELWKDEHESVEIDELKVQMENSATECEQWKDGISVLGSEVIDSVEIVAKEQDSAIE 480
TEEPELWKDEHESVEIDELKVQMENSATECEQWKDGISVLGSEVIDSVEIVAKEQDSAIE
Sbjct: 421 TEEPELWKDEHESVEIDELKVQMENSATECEQWKDGISVLGSEVIDSVEIVAKEQDSAIE 480
Query: 481 SEQLKDCEPKDGTKATDVTEVEVNEHTSCTESVLWKMDRSDECVTTKRGEFEAEEQKFTG 540
SEQLKDCEPKDGTKATDVTEVEVNEHTSCTESVLWKMDRSDECVTTKRGEFEAEEQKFTG
Sbjct: 481 SEQLKDCEPKDGTKATDVTEVEVNEHTSCTESVLWKMDRSDECVTTKRGEFEAEEQKFTG 540
Query: 541 RYQFWKICKPKEMEGAKLTVQGKNTVEALDQVLAIDRLAYLHDNNQEVTKEGIAPSETDQ 600
RYQFWKICKPKEMEGAKLTVQGKNTVEALDQVLAIDRLAYLHDNNQEVTKEGIAPSETDQ
Sbjct: 541 RYQFWKICKPKEMEGAKLTVQGKNTVEALDQVLAIDRLAYLHDNNQEVTKEGIAPSETDQ 600
Query: 601 ENSKVPDKXXXXXXXXXXXXXXLNANLRKLYRSMNVPVPRPLPSLVELMAASKRPRVSPA 660
ENSKVPDK LNANLRKLYRSMNVPVPRPLPSLVELMAASKRPRVSPA
Sbjct: 601 ENSKVPDKGSSDSSNAIGSSKGLNANLRKLYRSMNVPVPRPLPSLVELMAASKRPRVSPA 660
Query: 661 VQL 663
VQL
Sbjct: 661 VQL 663
>Os01g0881400 Viral capsid/hemagglutinin protein domain containing protein
Length = 455
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 126/214 (58%), Gaps = 20/214 (9%)
Query: 226 VIGFPRLSERATEMLALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPALTEPMRDEF 285
++GF L ++A + ARA QPEPL IR S+QWYA+ + +KP+LTE + D
Sbjct: 1 ILGFQNLYDKACTKIEEARASLQPEPLFIRPSTQWYAHC-----AQSQKPSLTEAVLDGC 55
Query: 286 GVWHVCFSMHSSREELEQALRFIQPKWVISTTPPCMAIELSYVKKHCFASRLRNDDPLWK 345
GVWH+CFS+HSSR+ELEQAL +QP+WVISTTPPC A+ELSYVKK CF + L DDPLWK
Sbjct: 56 GVWHICFSIHSSRDELEQALELLQPQWVISTTPPCFAMELSYVKKKCFKTCLTADDPLWK 115
Query: 346 LLRLSDGNSAVSGSPLAVPTVEMIKKCEEEEVTCSVKD----SFSSDGIRMRDQEPTLED 401
+ + S S S L E+ + SV D S S G D + +
Sbjct: 116 IFKNPLRKSVSSPSTLLDSDTHT-----NEDHSISVDDDHDHSASPSGEECTDFDICTLE 170
Query: 402 FEINVEPPV-----TLFGIARFGLTEEPELWKDE 430
+ PPV TLFG ARFG +EE ++ ++E
Sbjct: 171 LKFMPSPPVQEPDITLFGRARFG-SEEIDIMREE 203
>Os09g0439000 Sterile alpha motif SAM domain containing protein
Length = 966
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 145/322 (45%), Gaps = 31/322 (9%)
Query: 8 GLPFAVDTWTAASAVKRHRFLTHAHRDHIAGITATNV-AAVYASRLTI-LIACHIFPQLD 65
G PF VD + H FLTH H DH G+T + +Y S +T L+ I D
Sbjct: 640 GTPFRVDAFRYLRGDCCHWFLTHFHVDHYQGLTKSFCHGKIYCSSVTANLVHYKIGIPWD 699
Query: 66 RADAFVEVELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGASFGRVLHTGDCRLTPD 125
R + L + + +T FDANHCPGAV+ LFE ++ VLHTGD R + +
Sbjct: 700 RLHV---LPLNEKITI----AGVNLTCFDANHCPGAVIILFEPSNGKAVLHTGDFRFSSE 752
Query: 126 F---RFLAAD---YVFLDCTFAACSLHFPSKDDSIRQVINCIWKHP-NAPVVYLV-SDML 177
R L + + LD T+ FP+++ I+ VI I N ++L+ S +
Sbjct: 753 MANNRVLQSSPIHTLILDTTYCNPRYDFPTQEIVIQFVIEAIQAEAFNPKTLFLIGSYTI 812
Query: 178 GQEEILMEVSKVFGSKIYVDRDKNSECYHTLSLVAPE-----ILTDDSSSRFQVIGFPRL 232
G+E + MEV+++ KIYV K H L P+ +++ S V+ L
Sbjct: 813 GKERLYMEVARLLQKKIYVGAAKLQILKH---LGLPQEIMHWFTANEAESHIHVVPMWTL 869
Query: 233 SERATEMLALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPALTEPMRDEFGVWHVCF 292
+ M L+ LI+ +++ + + + RK +R + V +
Sbjct: 870 AS-FKRMKYLSTQYADRFDLIVAFCPTGWSFGKGKKRTPGRKWQQGAIIR-----YEVPY 923
Query: 293 SMHSSREELEQALRFIQPKWVI 314
S HSS EL + +RFI P+ +I
Sbjct: 924 SEHSSFTELREFVRFISPEHII 945
>Os04g0401800 DNA repair metallo-beta-lactamase domain containing protein
Length = 481
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 138/326 (42%), Gaps = 33/326 (10%)
Query: 8 GLPFAVDTWTAASAVK-RHRFLTHAHRDHIAGITATNV-AAVYASRLT---ILIACHIFP 62
G PF VD + + FL+H H DH G+T +Y + LT + + + P
Sbjct: 149 GTPFTVDAFRYGAVEGCNAYFLSHFHHDHYGGLTKKWCHGPIYCTALTARLVKMCLSVNP 208
Query: 63 QLDRADAFVEVELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGASFGRVLHTGDCR- 121
+ +EL ++ +VT +ANHCPGA + F + LHTGD R
Sbjct: 209 EY-----ICPLELDKEYVIEG----VSVTLLEANHCPGAALIHFRLGDGKKYLHTGDFRA 259
Query: 122 -----LTPDFRFLAADYVFLDCTFAACSLHFPSKDD----SIRQVINCIWKHPNAPVVYL 172
L P + + ++LD T+ FP K+D ++R + K P +V +
Sbjct: 260 SKSMQLYPLLQRGQINLLYLDTTYCNPKYKFPPKEDVIDFAVRTAKRYLQKEPKTLIV-V 318
Query: 173 VSDMLGQEEILMEVSKVFGSKIYVDRDKNSECY-HTLSLVAPEILTDDSSSRFQVIGFPR 231
+ +G+E + + +SK IY D + + S ++ I +D SS V+ P
Sbjct: 319 GAYSIGKENVYLAISKALQVPIYTDASRRRILHAFGWSDLSKMICSDSQSSSLHVL--PL 376
Query: 232 LSERATEMLALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPALTEP-MRDEFGVWHV 290
S R + Q ++ + + E T + L +P R + ++ V
Sbjct: 377 SSLRHENLQKYLETLKQRFLAVLAFRPTGWTFSE----ETGNQLDLIKPSSRGKITIYGV 432
Query: 291 CFSMHSSREELEQALRFIQPKWVIST 316
+S HSS EL + + F++P+ VI T
Sbjct: 433 PYSEHSSFSELREFVMFLRPQKVIPT 458
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,248,527
Number of extensions: 986445
Number of successful extensions: 2245
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2239
Number of HSP's successfully gapped: 4
Length of query: 663
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 556
Effective length of database: 11,448,903
Effective search space: 6365590068
Effective search space used: 6365590068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)