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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0439000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sterile alpha motif SAM domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0175) R2 : 0.00848
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0728 (0.0369) R2dN8 : 0.011 R2N8 : 0.00848
σ : 0.33
deviance : 49.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.05 0.326 2.89 -0.0812 0.0106 -0.348 -0.313 -1.26 0.13 2.65 9.099 4639 -- --
48.81 0.325 2.92 0.00218 0.0289 -0.152 -0.27 -- 0.0902 2.56 8.95 4638 -- --
48.38 0.324 2.89 -0.0707 0.0138 -0.34 -- -1.19 0.129 23.6 9.089 4638 -- --
48.93 0.326 2.92 0.0133 0.0233 -0.159 -- -- 0.0895 2.63 9.698 4639 -- --
48.39 0.324 2.89 -0.0716 -- -0.347 -- -1.2 0.131 -- 9.098 4638 -- --
49.35 0.329 2.93 0.0472 0.0501 -- -0.275 -- 0.0764 2.04 -- -- -- --
49.63 0.33 2.93 0.0556 0.0504 -- -- -- 0.0782 1.02 -- -- -- --
48.96 0.326 2.92 0.0119 -- -0.175 -- -- 0.0936 -- 9.6 4639 -- --
48.92 0.326 2.92 -- 0.0253 -0.164 -- -- 0.0934 0.561 9.684 4639 -- --
49.79 0.33 2.92 0.0575 -- -- -- -- 0.0792 -- -- -- -- --
49.71 0.33 2.93 -- 0.0514 -- -- -- 0.072 1.07 -- -- -- --
48.96 0.326 2.92 -- -- -0.179 -- -- 0.0977 -- 9.696 4638 -- --
49.87 0.33 2.93 -- -- -- -- -- 0.0728 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.70 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 46.71 wind 1.0 30 < th dose independent rect. 2 1
6 46.71 temperature 20.0 30 > th dose independent rect. 2 1
7 46.71 wind 3.0 30 < th dose dependent rect. 2 1
11 46.71 temperature 15.0 30 > th dose dependent rect. 2 1
15 46.72 temperature 10.0 30 > th dose independent rect. 2 1
17 46.72 temperature 25.0 30 < th dose independent rect. 2 1
19 46.72 humidity 50.0 30 > th dose independent rect. 2 1
24 46.72 atmosphere 995.0 30 > th dose independent rect. 2 1
25 46.72 atmosphere 1005.0 30 > th dose independent rect. 2 1
26 46.72 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 46.72 radiation 1.0 30 < th dose independent rect. 2 1
33 46.72 precipitation 0.1 30 < th dose independent rect. 2 1
34 46.72 temperature 10.0 30 > th dose independent rect. 3 23
36 46.72 humidity 50.0 30 > th dose dependent rect. 2 1
40 46.72 atmosphere 995.0 30 > th dose dependent rect. 2 1
42 46.72 atmosphere 1015.0 30 < th dose dependent rect. 2 1
43 46.72 radiation 1.0 30 < th dose dependent rect. 2 1
48 46.72 precipitation 0.1 30 < th dose dependent rect. 2 1
52 46.74 temperature 30.0 30 < th dose dependent rect. 2 1
59 46.77 wind 1.0 30 > th dose independent rect. 2 1
102 46.81 humidity 50.0 30 > th dose independent rect. 3 23
104 46.82 atmosphere 995.0 30 > th dose independent rect. 3 23
108 46.84 precipitation 0.1 30 < th dose independent rect. 3 23
109 46.84 precipitation 0.1 30 < th dose dependent rect. 3 23
113 46.89 wind 9.0 30 < th dose independent rect. 3 23
119 46.94 precipitation 0.1 720 > th dose independent rect. 2 1
121 46.94 radiation 1.0 43200 < th dose dependent rect. 3 1
122 46.94 precipitation 0.1 720 > th dose dependent rect. 2 1
125 46.97 wind 9.0 1440 < th dose independent rect. 3 1
126 46.97 temperature 10.0 1440 > th dose independent rect. 3 1
129 46.97 temperature 30.0 1440 < th dose independent rect. 3 1
133 46.97 humidity 50.0 1440 > th dose independent rect. 3 1
142 46.97 atmosphere 995.0 1440 > th dose independent rect. 3 1
143 46.97 radiation 1.0 1440 < th dose independent rect. 3 1
163 46.97 temperature 10.0 1440 > th dose independent rect. 4 23
166 46.97 radiation 1.0 1440 < th dose dependent rect. 3 1
188 47.06 humidity 90.0 270 > th dose independent rect. 10 3
190 47.06 humidity 90.0 270 > th dose dependent rect. 10 3
191 47.07 precipitation 0.1 270 > th dose independent rect. 8 1
193 47.07 precipitation 0.1 270 > th dose dependent rect. 8 1
196 47.08 humidity 90.0 270 > th dose independent rect. 10 1
214 47.09 humidity 90.0 270 > th dose dependent rect. 10 1
220 47.17 radiation 1.0 720 < th dose dependent rect. 18 9
224 47.22 radiation 40.0 720 < th dose independent rect. 3 6
226 47.28 wind 1.0 30 < th dose independent rect. 17 1
237 47.28 wind 1.0 10 < th dose dependent rect. 11 1
238 47.28 wind 1.0 30 < th dose dependent rect. 17 1
252 47.30 temperature 25.0 30 > th dose dependent rect. 20 1
253 47.31 wind 1.0 90 < th dose dependent rect. 11 1
254 47.32 temperature 25.0 30 > th dose independent rect. 20 1
255 47.32 temperature 10.0 1440 > th dose independent rect. 21 1
258 47.32 temperature 30.0 1440 < th dose independent rect. 21 1
262 47.32 humidity 50.0 1440 > th dose independent rect. 21 1
268 47.32 atmosphere 995.0 1440 > th dose independent rect. 21 1
269 47.32 radiation 1.0 1440 < th dose independent rect. 21 1
289 47.32 temperature 10.0 1440 > th dose independent rect. 22 23
292 47.32 radiation 30.0 4320 < th dose dependent rect. 21 1
296 47.35 wind 3.0 30 > th dose independent rect. 20 1
299 47.35 radiation 40.0 43200 < th dose dependent rect. 21 1
301 47.36 humidity 70.0 90 < th dose independent rect. 17 1
302 47.36 atmosphere 1005.0 30 > th dose dependent rect. 20 1
305 47.37 wind 9.0 1440 < th dose independent rect. 21 1
307 47.37 humidity 90.0 30 < th dose independent rect. 20 1
310 47.37 temperature 25.0 90 < th dose dependent rect. 10 2
312 47.38 atmosphere 1005.0 30 > th dose independent rect. 20 1
313 47.38 radiation 1.0 720 < th dose independent rect. 18 9
319 47.39 humidity 90.0 30 < th dose dependent rect. 20 1
326 47.40 wind 1.0 30 > th dose dependent rect. 20 1
327 47.40 humidity 70.0 90 < th dose dependent rect. 17 1
335 47.40 temperature 10.0 720 > th dose dependent rect. 3 6
340 47.42 wind 5.0 30 < th dose independent rect. 20 1
342 47.42 humidity 80.0 30 > th dose independent rect. 20 1
348 47.43 temperature 10.0 30 > th dose independent rect. 20 1
350 47.43 temperature 30.0 30 < th dose independent rect. 20 1
351 47.43 humidity 50.0 30 > th dose independent rect. 20 1
355 47.43 atmosphere 1010.0 30 < th dose independent rect. 20 1
357 47.43 radiation 1.0 30 < th dose independent rect. 20 1
362 47.43 precipitation 0.1 30 < th dose independent rect. 20 1
363 47.43 temperature 10.0 30 > th dose independent rect. 21 23
367 47.43 radiation 1.0 30 < th dose dependent rect. 20 1
372 47.43 precipitation 0.1 30 < th dose dependent rect. 20 1
377 47.45 wind 9.0 30 < th dose dependent rect. 20 1
378 47.45 humidity 50.0 30 > th dose dependent rect. 20 1
380 47.45 temperature 20.0 720 > th dose dependent rect. 3 6
381 47.46 temperature 25.0 720 > th dose independent rect. 3 6
423 47.49 wind 1.0 90 < th dose independent rect. 11 1
424 47.50 wind 9.0 30 < th dose independent rect. 21 23
427 47.51 atmosphere 1015.0 30 < th dose dependent rect. 20 1
431 47.52 wind 1.0 10 < th dose independent rect. 11 1
467 47.58 temperature 30.0 30 < th dose dependent rect. 20 1
490 47.60 temperature 20.0 720 > th dose dependent rect. 3 3
494 47.61 temperature 20.0 720 > th dose dependent rect. 3 1
527 47.66 precipitation 0.1 720 < th dose independent rect. 15 6
533 47.66 precipitation 0.1 720 < th dose dependent rect. 15 6
564 47.67 temperature 25.0 90 > th dose independent rect. 3 16
585 47.71 temperature 25.0 270 > th dose independent rect. 3 13
589 47.72 precipitation 0.1 720 < th dose independent rect. 15 15
590 47.72 radiation 40.0 720 < th dose independent rect. 17 16
595 47.72 precipitation 0.1 720 < th dose dependent rect. 15 15
599 47.74 precipitation 0.1 720 < th dose independent rect. 9 18
600 47.74 precipitation 0.1 720 < th dose dependent rect. 9 18
602 47.75 precipitation 0.1 720 < th dose independent rect. 18 9
611 47.75 precipitation 0.1 720 < th dose dependent rect. 18 9
612 47.76 temperature 20.0 720 > th dose independent rect. 3 2
614 47.76 wind 9.0 720 < th dose independent rect. 18 9
626 47.77 wind 9.0 720 < th dose independent rect. 3 6
627 47.77 temperature 10.0 720 > th dose independent rect. 3 6
628 47.77 temperature 10.0 720 > th dose independent rect. 15 6
629 47.77 humidity 50.0 720 > th dose independent rect. 3 6
630 47.77 atmosphere 995.0 720 > th dose independent rect. 3 6
631 47.77 radiation 40.0 720 < th dose independent rect. 15 6
632 47.77 temperature 10.0 720 > th dose independent rect. 9 18
633 47.77 temperature 10.0 720 > th dose independent rect. 21 18
643 47.78 atmosphere 1015.0 720 < th dose independent rect. 15 6
656 47.79 wind 1.0 720 > th dose independent rect. 15 6
658 47.79 wind 1.0 10 < th dose independent rect. 11 7
684 47.80 precipitation 0.1 720 > th dose independent rect. 6 1
686 47.80 temperature 10.0 720 > th dose independent rect. 6 9
687 47.80 temperature 10.0 720 > th dose independent rect. 18 9
688 47.80 humidity 50.0 720 > th dose independent rect. 18 9
689 47.80 atmosphere 995.0 720 > th dose independent rect. 18 9
690 47.80 atmosphere 1015.0 720 < th dose independent rect. 6 9
691 47.80 radiation 20.0 720 < th dose independent rect. 18 9
695 47.80 temperature 10.0 720 > th dose independent rect. 3 15
696 47.80 temperature 10.0 720 > th dose independent rect. 15 15
697 47.80 humidity 50.0 720 > th dose independent rect. 21 18
699 47.80 precipitation 0.1 720 > th dose dependent rect. 6 1
719 47.82 temperature 25.0 270 > th dose independent rect. 23 4
720 47.82 atmosphere 995.0 720 > th dose independent rect. 21 18
721 47.82 wind 1.0 10 > th dose independent rect. 21 23
724 47.83 temperature 25.0 10 < th dose independent rect. 12 1
727 47.83 temperature 10.0 270 > th dose dependent rect. 3 13
728 47.84 temperature 20.0 720 < th dose independent rect. 3 3
729 47.84 temperature 30.0 720 < th dose independent rect. 18 9
738 47.85 temperature 10.0 30 > th dose dependent rect. 3 23
743 47.86 humidity 50.0 10 > th dose independent rect. 21 23
747 47.86 temperature 20.0 270 > th dose dependent rect. 3 13
751 47.87 radiation 40.0 720 < th dose independent rect. 21 12
760 47.88 atmosphere 995.0 720 > th dose independent rect. 6 9
772 47.89 radiation 40.0 30 < th dose independent rect. 3 23
786 47.90 temperature 25.0 270 > th dose dependent rect. 23 4
788 47.91 precipitation 0.1 1440 < th dose independent rect. 9 1
790 47.91 atmosphere 1015.0 720 < th dose independent rect. 3 6
794 47.91 precipitation 0.1 1440 < th dose dependent rect. 9 1
803 47.92 wind 9.0 720 < th dose independent rect. 15 6
804 47.92 temperature 30.0 720 < th dose independent rect. 3 6
805 47.92 precipitation 0.1 720 < th dose independent rect. 3 6
806 47.92 temperature 30.0 720 < th dose dependent rect. 2 1
809 47.92 precipitation 0.1 720 < th dose dependent rect. 3 6
810 47.92 temperature 15.0 90 > th dose dependent rect. 3 16
815 47.93 precipitation 0.1 720 < th dose independent rect. 6 9
818 47.93 wind 3.0 30 < th dose dependent rect. 24 3
825 47.93 precipitation 0.1 720 < th dose dependent rect. 6 9
829 47.94 temperature 25.0 720 < th dose dependent rect. 3 3
839 47.95 precipitation 0.1 720 < th dose independent rect. 21 18
849 47.95 precipitation 0.1 720 < th dose dependent rect. 21 18
852 47.96 radiation 40.0 720 < th dose independent rect. 15 15
855 47.96 humidity 50.0 14400 < th dose dependent rect. 15 1
883 47.98 temperature 15.0 90 > th dose dependent rect. 19 8
961 48.01 atmosphere 1015.0 30 < th dose independent rect. 3 23
962 48.01 temperature 25.0 720 < th dose dependent rect. 5 1
977 48.02 atmosphere 995.0 10 > th dose independent rect. 21 23