Os01g0881400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Viral capsid/hemagglutinin protein domain containing protein.
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Os01g0881400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Viral capsid/hemagglutinin protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.47 | 0.303 | 9.29 | 0.854 | 0.477 | -0.0309 | -0.0821 | -1.87 | 0.288 | 4.85 | 24.91 | 1820 | -- | -- |
| 44.97 | 0.312 | 9.34 | 0.325 | 0.487 | -0.122 | 0.0296 | -- | 0.148 | 5.06 | 28.2 | 4495 | -- | -- |
| 41.49 | 0.3 | 9.29 | 0.856 | 0.477 | -0.0301 | -- | -1.87 | 0.289 | 4.83 | 24.91 | 1820 | -- | -- |
| 44.87 | 0.312 | 9.34 | 0.314 | 0.475 | -0.143 | -- | -- | 0.154 | 4.88 | 28.3 | 4496 | -- | -- |
| 53.19 | 0.34 | 9.29 | 0.86 | -- | -0.0269 | -- | -1.32 | 0.311 | -- | 23.7 | 1219 | -- | -- |
| 45.49 | 0.316 | 9.34 | 0.359 | 0.476 | -- | -0.186 | -- | 0.165 | 4.91 | -- | -- | -- | -- |
| 45.58 | 0.316 | 9.34 | 0.36 | 0.474 | -- | -- | -- | 0.166 | 4.85 | -- | -- | -- | -- |
| 55.78 | 0.349 | 9.34 | 0.411 | -- | 0.148 | -- | -- | 0.185 | -- | 28.3 | 4496 | -- | -- |
| 44.4 | 0.31 | 9.38 | -- | 0.469 | -0.311 | -- | -- | 0.00223 | 4.92 | 26.31 | 47520 | -- | -- |
| 57.45 | 0.354 | 9.35 | 0.377 | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
| 48.99 | 0.327 | 9.35 | -- | 0.481 | -- | -- | -- | 0.126 | 4.83 | -- | -- | -- | -- |
| 56 | 0.349 | 9.38 | -- | -- | -0.331 | -- | -- | 0.0045 | -- | 26.35 | 47520 | -- | -- |
| 61.2 | 0.365 | 9.35 | -- | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.80 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 2 | 40.18 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 3 | 40.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 4 | 40.21 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 5 | 40.23 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 6 | 40.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 12 | 40.51 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 15 | 40.58 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 38 | 40.90 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 48 | 40.96 | wind | 3 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 49 | 40.98 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 60 | 41.02 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 65 | 41.05 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 70 | 41.05 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 17 |
| 79 | 41.10 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 105 | 41.15 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 107 | 41.15 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 132 | 41.18 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 135 | 41.20 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 1 |
| 149 | 41.22 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 176 | 41.29 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 202 | 41.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 213 | 41.34 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 214 | 41.34 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 219 | 41.36 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 227 | 41.37 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 231 | 41.38 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 233 | 41.39 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 240 | 41.40 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 249 | 41.42 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 275 | 41.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 301 | 41.48 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 302 | 41.48 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 316 | 41.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 331 | 41.51 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 343 | 41.52 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 346 | 41.52 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 15 |
| 362 | 41.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 379 | 41.54 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 381 | 41.54 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 383 | 41.54 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 415 | 41.56 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 428 | 41.57 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 20 |
| 436 | 41.58 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 437 | 41.58 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 5 |
| 441 | 41.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 12 |
| 444 | 41.58 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 20 |
| 477 | 41.60 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 2 | 23 |
| 481 | 41.60 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 499 | 41.62 | wind | 9 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 510 | 41.62 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 3 |
| 513 | 41.62 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 524 | 41.63 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 11 |
| 525 | 41.63 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 546 | 41.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 551 | 41.65 | radiation | 1 | 4320 | > th | dose independent | sin | 15 | NA |
| 566 | 41.66 | radiation | 1 | 4320 | < th | dose independent | sin | 15 | NA |
| 594 | 41.67 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 13 |
| 608 | 41.67 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 16 |
| 630 | 41.69 | wind | 5 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 651 | 41.69 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 693 | 41.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 696 | 41.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 715 | 41.72 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 719 | 41.72 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 765 | 41.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 16 |
| 766 | 41.74 | temperature | 25 | 1440 | > th | dose independent | sin | 15 | NA |
| 786 | 41.74 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 811 | 41.75 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 17 |
| 829 | 41.76 | temperature | 25 | 1440 | < th | dose independent | sin | 15 | NA |
| 830 | 41.76 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 868 | 41.77 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 903 | 41.78 | radiation | 1 | 4320 | < th | dose dependent | sin | 15 | NA |
| 912 | 41.79 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 917 | 41.79 | wind | 5 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 920 | 41.79 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 952 | 41.80 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 8 |