BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0881400 Os01g0881400|J100065G15
         (455 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19025.1  | chr1:6568920-6570800 FORWARD LENGTH=550            120   2e-27

>AT1G19025.1 | chr1:6568920-6570800 FORWARD LENGTH=550
          Length = 549

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 99/210 (47%), Gaps = 16/210 (7%)

Query: 3   GFQNLYDKACTKIEEARASLQPEPLFIRPSTQWY----------AHCAQSQKPSLTEAVL 52
           GF  LY++   K+ EAR+ LQ EPL IRPS QWY              + +K   +EAV 
Sbjct: 250 GFPKLYERTSAKLAEARSKLQSEPLIIRPSAQWYVCDDEDDWKSGSIQKQRKVRFSEAVK 309

Query: 53  DGCGVWHICFSIHSSRDXXXXXXXXXXXXWVISTTPPCFAMELSYVKKKCFKTCLTADDP 112
           D  G+WH+C+S+HSSR             WV+ST P C AMEL+YVKK CF +  + DDP
Sbjct: 310 DEFGLWHVCYSMHSSRAELESAMQLLSPKWVVSTVPSCRAMELNYVKKNCFISRFSPDDP 369

Query: 113 LWKIFKNPLRKSVSSPSTLLDSDTHTNEXXXXXXXXXXXXXXXXXGEECTDFDICTLELK 172
            WK+    +       S +  +DT T                     E    +  + + K
Sbjct: 370 FWKLLDIDMEA-----SPVAAADTQTVALSCCLMSEQIILDSGKSKLEPV-IESSSTKKK 423

Query: 173 FMPSPPVQEPDITLFGRARFGSEEIDIMRE 202
            +   P     +TLFGRAR  S+E D + E
Sbjct: 424 LLSLSPENSLPVTLFGRARQSSQECDQLHE 453




 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 384 EETTDCERGTLCVTGSSK--C--LNASLKRLYRSRNVPVPRPLPSLVGLLESTKR 434
           EET + E  T+  T +SK  C  L+  L++LYRS N PVPRPLPSL+ L+ + KR
Sbjct: 488 EETVEKESCTIFSTSTSKETCKDLSGDLRKLYRSMNAPVPRPLPSLMELMNARKR 542



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,867,042
Number of extensions: 395587
Number of successful extensions: 1099
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1098
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 353
Effective length of database: 8,310,137
Effective search space: 2933478361
Effective search space used: 2933478361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)