BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0881400 Os01g0881400|J100065G15
         (455 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0881400  Viral capsid/hemagglutinin protein domain cont...   863   0.0  
Os08g0107600  DNA repair metallo-beta-lactamase domain conta...   137   2e-32

>Os01g0881400 Viral capsid/hemagglutinin protein domain containing protein
          Length = 455

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/455 (93%), Positives = 426/455 (93%)

Query: 1   ILGFQNLYDKACTKIEEARASLQPEPLFIRPSTQWYAHCAQSQKPSLTEAVLDGCGVWHI 60
           ILGFQNLYDKACTKIEEARASLQPEPLFIRPSTQWYAHCAQSQKPSLTEAVLDGCGVWHI
Sbjct: 1   ILGFQNLYDKACTKIEEARASLQPEPLFIRPSTQWYAHCAQSQKPSLTEAVLDGCGVWHI 60

Query: 61  CFSIHSSRDXXXXXXXXXXXXWVISTTPPCFAMELSYVKKKCFKTCLTADDPLWKIFKNP 120
           CFSIHSSRD            WVISTTPPCFAMELSYVKKKCFKTCLTADDPLWKIFKNP
Sbjct: 61  CFSIHSSRDELEQALELLQPQWVISTTPPCFAMELSYVKKKCFKTCLTADDPLWKIFKNP 120

Query: 121 LRKSVSSPSTLLDSDTHTNEXXXXXXXXXXXXXXXXXGEECTDFDICTLELKFMPSPPVQ 180
           LRKSVSSPSTLLDSDTHTNE                 GEECTDFDICTLELKFMPSPPVQ
Sbjct: 121 LRKSVSSPSTLLDSDTHTNEDHSISVDDDHDHSASPSGEECTDFDICTLELKFMPSPPVQ 180

Query: 181 EPDITLFGRARFGSEEIDIMREELCNQRIAVEEARAYSTAYLICDGSSEVETCPNSRTDF 240
           EPDITLFGRARFGSEEIDIMREELCNQRIAVEEARAYSTAYLICDGSSEVETCPNSRTDF
Sbjct: 181 EPDITLFGRARFGSEEIDIMREELCNQRIAVEEARAYSTAYLICDGSSEVETCPNSRTDF 240

Query: 241 VIVQASKSQQSYSGYEDEDPSCQCAASPRQLESRSILSLPIGECSLSPVVDNPKKSEVVI 300
           VIVQASKSQQSYSGYEDEDPSCQCAASPRQLESRSILSLPIGECSLSPVVDNPKKSEVVI
Sbjct: 241 VIVQASKSQQSYSGYEDEDPSCQCAASPRQLESRSILSLPIGECSLSPVVDNPKKSEVVI 300

Query: 301 ESESTNHAESSNLCMVRRGYSGSEDDCQRAASPRQLEKLSIRSSPIGECSLSPVADKPEK 360
           ESESTNHAESSNLCMVRRGYSGSEDDCQRAASPRQLEKLSIRSSPIGECSLSPVADKPEK
Sbjct: 301 ESESTNHAESSNLCMVRRGYSGSEDDCQRAASPRQLEKLSIRSSPIGECSLSPVADKPEK 360

Query: 361 SEVVIESESTNLAESSNLCMVRGEETTDCERGTLCVTGSSKCLNASLKRLYRSRNVPVPR 420
           SEVVIESESTNLAESSNLCMVRGEETTDCERGTLCVTGSSKCLNASLKRLYRSRNVPVPR
Sbjct: 361 SEVVIESESTNLAESSNLCMVRGEETTDCERGTLCVTGSSKCLNASLKRLYRSRNVPVPR 420

Query: 421 PLPSLVGLLESTKRMKMQPGSDGSSLNSWHTLPRR 455
           PLPSLVGLLESTKRMKMQPGSDGSSLNSWHTLPRR
Sbjct: 421 PLPSLVGLLESTKRMKMQPGSDGSSLNSWHTLPRR 455



>Os08g0107600 DNA repair metallo-beta-lactamase domain containing protein
          Length = 663

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 119/230 (51%), Gaps = 28/230 (12%)

Query: 1   ILGFQNLYDKACTKIEEARASLQPEPLFIRPSTQWYAHC-----AQSQKPSLTEAVLDGC 55
           ++GF  L ++A   +  ARA  QPEPL IR S+QWYA+      +  +KP+LTE + D  
Sbjct: 226 VIGFPRLSERATEMLALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPALTEPMRDEF 285

Query: 56  GVWHICFSIHSSRDXXXXXXXXXXXXWVISTTPPCFAMELSYVKKKCFKTCLTADDPLWK 115
           GVWH+CFS+HSSR+            WVISTTPPC A+ELSYVKK CF + L  DDPLWK
Sbjct: 286 GVWHVCFSMHSSREELEQALRFIQPKWVISTTPPCMAIELSYVKKHCFASRLRNDDPLWK 345

Query: 116 IFKNPLRKSVSS------PSTLLDSDTHTNEXXXXXXXXXXXXXXXXXGEECT--DFDIC 167
           + +     S  S      P+  +       E                  +E T  DF+I 
Sbjct: 346 LLRLSDGNSAVSGSPLAVPTVEMIKKCEEEEVTCSVKDSFSSDGIRMRDQEPTLEDFEIN 405

Query: 168 TLELKFMPSPPVQEPDITLFGRARFG-SEEIDIMREELCNQRIAVEEARA 216
                        EP +TLFG ARFG +EE ++ ++E  ++ + ++E + 
Sbjct: 406 V------------EPPVTLFGIARFGLTEEPELWKDE--HESVEIDELKV 441



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,413,874
Number of extensions: 608924
Number of successful extensions: 1461
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1456
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 351
Effective length of database: 11,605,545
Effective search space: 4073546295
Effective search space used: 4073546295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)