BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0107600 Os08g0107600|AK119294
(663 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19025.1 | chr1:6568920-6570800 FORWARD LENGTH=550 422 e-118
AT1G66730.1 | chr1:24884991-24891823 FORWARD LENGTH=1397 103 4e-22
AT2G45700.1 | chr2:18827216-18830505 REVERSE LENGTH=724 100 2e-21
AT1G27410.1 | chr1:9517226-9518743 FORWARD LENGTH=423 92 7e-19
AT3G26680.1 | chr3:9801309-9803517 FORWARD LENGTH=485 72 1e-12
>AT1G19025.1 | chr1:6568920-6570800 FORWARD LENGTH=550
Length = 549
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/446 (49%), Positives = 285/446 (63%), Gaps = 33/446 (7%)
Query: 1 MPIELPRGLPFAVDT---WTAASAVKRHRFLTHAHRDHIAGITATNVAA--VYASRLTIL 55
M IE+PRGLPFAVDT +T KRH FLTHAH+DH G++ +N+ +Y++ LTI
Sbjct: 1 MSIEMPRGLPFAVDTFGPYTETKRRKRHHFLTHAHKDHTVGVSPSNIVVFPIYSTSLTIS 60
Query: 56 IACHIFPQLDRADAFVEVELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGASFGRVL 115
+ FPQLD + FV VE+G V+V DPDG+F VTAFDANHCPGAVMFLFEG SFG +L
Sbjct: 61 LLLQRFPQLDES-YFVRVEIGQSVIVDDPDGEFKVTAFDANHCPGAVMFLFEG-SFGNIL 118
Query: 116 HTGDCRLTPDFRF----------------LAADYVFLDCTF--AACSLHFPSKDDSIRQV 157
HTGDCRLT D + Y+FLDCTF ++ S FP+K +IRQ+
Sbjct: 119 HTGDCRLTLDCLHSLPEKYVGRSHGMKPKCSLGYIFLDCTFGKSSHSQRFPTKHSAIRQI 178
Query: 158 INCIWKHPNAPVVYLVSDMLGQEEILMEVSKVFGSKIYVDRDKNSECYHTLSLVAPEILT 217
INCIW HP+APVVYL DMLGQE++L+EVS+ FGSKIYVD+ N EC+ +L ++ PEI++
Sbjct: 179 INCIWNHPDAPVVYLACDMLGQEDVLLEVSRTFGSKIYVDKATNLECFRSLMVIVPEIVS 238
Query: 218 DDSSSRFQVI-GFPRLSERATEMLALARAKHQPEPLIIRASSQWYAY-----YEPPEGST 271
+D SSRF + GFP+L ER + LA AR+K Q EPLIIR S+QWY ++
Sbjct: 239 EDPSSRFHIFSGFPKLYERTSAKLAEARSKLQSEPLIIRPSAQWYVCDDEDDWKSGSIQK 298
Query: 272 KRKPALTEPMRDEFGVWHVCFSMHSSREELEQALRFIQPKWVISTTPPCMAIELSYVKKH 331
+RK +E ++DEFG+WHVC+SMHSSR ELE A++ + PKWV+ST P C A+EL+YVKK+
Sbjct: 299 QRKVRFSEAVKDEFGLWHVCYSMHSSRAELESAMQLLSPKWVVSTVPSCRAMELNYVKKN 358
Query: 332 CFASRLRNDDPLWKLLRLSDGNSAVSGSPLAVPTVEMIKKCEEEEVTCSVKDSFSSDGIR 391
CF SR DDP WKLL + S V+ + TV + E++ S I
Sbjct: 359 CFISRFSPDDPFWKLLDIDMEASPVAAA--DTQTVALSCCLMSEQIILDSGKSKLEPVIE 416
Query: 392 MRDQEPTLEDFEINVEPPVTLFGIAR 417
+ L PVTLFG AR
Sbjct: 417 SSSTKKKLLSLSPENSLPVTLFGRAR 442
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 29/34 (85%)
Query: 623 LNANLRKLYRSMNVPVPRPLPSLVELMAASKRPR 656
L+ +LRKLYRSMN PVPRPLPSL+ELM A KR R
Sbjct: 511 LSGDLRKLYRSMNAPVPRPLPSLMELMNARKRSR 544
>AT1G66730.1 | chr1:24884991-24891823 FORWARD LENGTH=1397
Length = 1396
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 29/307 (9%)
Query: 27 FLTHAHRDHIAGITAT-NVAAVYASRLTILIACHIFPQLDRADAFV-EVELGAPVLVPDP 84
FL+H H DH +G++++ + +Y S T + I L FV + + V +
Sbjct: 82 FLSHFHSDHYSGLSSSWSKGIIYCSHKTARLVAEI---LQVPSQFVFALPMNQMVKI--- 135
Query: 85 DGDFTVTAFDANHCPGAVMFLF----EGASFGRVLHTGDCRLTPDFRF-------LAADY 133
DG V +ANHCPGAV FLF E + F + +HTGD R + RF + D
Sbjct: 136 DGS-EVVLIEANHCPGAVQFLFKVKLESSGFEKYVHTGDFRFCDEMRFDPFLNGFVGCDG 194
Query: 134 VFLDCTFAACSLHFPSKDDSIRQVINCIWKHPNAPVVYLVSD-MLGQEEILMEVSKVFGS 192
VFLD T+ FPS+++S+ V++ I K V++LV+ ++G+E+IL+E+++
Sbjct: 195 VFLDTTYCNPKFVFPSQEESVGYVVSVIDKISEEKVLFLVATYVVGKEKILVEIARRCKR 254
Query: 193 KIYVDRDKNSECYHTLSLVAPEILT-DDSSSRFQVIGFPRLSERATEMLALARAKHQPEP 251
KI VD K S L + T D++ S V+G+ L E T E
Sbjct: 255 KIVVDARKMS-MLSVLGCGEEGMFTEDENESDVHVVGWNVLGE--TWPYFRPNFVKMNEI 311
Query: 252 LIIRASSQWYAYYEPPEGSTK--RKPALTEPMRDEFGVWHVCFSMHSSREELEQALRFIQ 309
++ + + + P G T ++ +D + V +S HS+ +EL + ++F++
Sbjct: 312 MVEKGYDKVVGFV--PTGWTYEVKRNKFAVRFKDSMEIHLVPYSEHSNYDELREFIKFLK 369
Query: 310 PKWVIST 316
PK VI T
Sbjct: 370 PKRVIPT 376
>AT2G45700.1 | chr2:18827216-18830505 REVERSE LENGTH=724
Length = 723
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 146/317 (46%), Gaps = 23/317 (7%)
Query: 8 GLPFAVDTWTAASAVKRHRFLTHAHRDHIAGITAT-NVAAVYASRLTI-LIACHIFPQLD 65
G PF VD + + H FLTH H DH G+T + + +Y S +T L+ I +
Sbjct: 400 GTPFRVDAFKYLTRDCCHWFLTHFHLDHYQGLTKSFSHGKIYCSLVTAKLVNMKIGIPWE 459
Query: 66 RADAFVEVELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGASFGRVLHTGDCRLTPD 125
R ++LG V + D VT FDANHCPG++M LFE A+ VLHTGD R + +
Sbjct: 460 RLQV---LDLGQKVNISGID----VTCFDANHCPGSIMILFEPANGKAVLHTGDFRYSEE 512
Query: 126 F-RFLAADYV---FLDCTFAACSLHFPSKDDSIRQVINCIWKHP-NAPVVYLV-SDMLGQ 179
+L ++ LD T+ FP ++ I+ V+ I N ++L+ S +G+
Sbjct: 513 MSNWLIGSHISSLILDTTYCNPQYDFPKQEAVIQFVVEAIQAEAFNPKTLFLIGSYTIGK 572
Query: 180 EEILMEVSKVFGSKIYVD--RDKNSECYHTLSLVAPEILTDDSSSRFQVIGFPRLSERAT 237
E + +EV++V KIY++ + K EC + S V+ L+
Sbjct: 573 ERLFLEVARVLREKIYINPAKLKLLECLGFSKDDIQWFTVKEEESHIHVVPLWTLASFKR 632
Query: 238 EMLALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPALTEPMRDEFGVWHVCFSMHSS 297
R ++ ++ + + W + G TK+K + + V +S HSS
Sbjct: 633 LKHVANRYTNRYSLIVAFSPTGWTS------GKTKKKSPGRRLQQGTIIRYEVPYSEHSS 686
Query: 298 REELEQALRFIQPKWVI 314
EL++ ++ + P+ +I
Sbjct: 687 FTELKEFVQKVSPEVII 703
>AT1G27410.1 | chr1:9517226-9518743 FORWARD LENGTH=423
Length = 422
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 176/422 (41%), Gaps = 74/422 (17%)
Query: 12 AVDTWTAASAVKRHRFLTHAHRDHIAGITAT-NVAAVYASRLTILIACHIFPQLDRADAF 70
+VD W S FLTH H DH G++ + +Y SR T + FP D +
Sbjct: 7 SVDRWRNGSQAY---FLTHIHSDHTRGLSGGWSQGPLYCSRTTASLFPSRFPGFDLSLLR 63
Query: 71 VEVELGAPVL-VPDPDGDFTV----TAFDANHCPGAVMFLFEGASFGRVLHTGDCRLTPD 125
V L + P TV A DA+HCPG++MFLF G FG L+TGD R D
Sbjct: 64 VVPLFSWTSLSLRSPSSGSTVRLHLMAIDAHHCPGSIMFLFRG-DFGCFLYTGDFRWDSD 122
Query: 126 FR------FLAA------DYVFLDCTFAACSLHFPSKDDSIRQVINCIWKHPNAPVVYLV 173
+AA D ++LD T+ FPS+ +++ V + I HP+ ++ V
Sbjct: 123 ASDEARTTLVAAIDEFPVDILYLDNTYCNPIYSFPSRLVAVQLVADIIASHPSHDIIIAV 182
Query: 174 SDMLGQEEILMEVSKVFGSKIYVDRDKNSECYHTLSLVAPEILTDDSSSRFQVIGFPRLS 233
D LG+E++L+ VS++ KI+V E T+ L+ + + +S +V PR S
Sbjct: 183 -DSLGKEDLLVHVSRILNIKIWV----WPERLRTMHLLGFQDIFTTDTSLTRVRAVPRYS 237
Query: 234 ERATEMLALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPA-LTEPMRDEF------- 285
+ L P I+ + W P +G K + LT M++E
Sbjct: 238 FSIQTLEGLNTM--CPTIGIMPSGLPWVK--RPFKGDDKLSGSFLTASMKNETVSAKKEL 293
Query: 286 ----------GVWHVCFSMHSSREELEQALRFIQPKWVISTTPPCMAIELSYVKKHCFAS 335
++ V +S HS EE+ + ++ ++PK + + SYV
Sbjct: 294 EAAAVHKFHDYMYSVHYSDHSCYEEIGEFIKLVKPK----SMKGIVVSSSSYV------- 342
Query: 336 RLRNDDPLWKLLRLSDGNSAVSGSPLAVPTVEMIK-KCEEEEVTCSVKDSFSSDGIRMRD 394
DPL+ R+ N P V +++ EE +K +SD RM
Sbjct: 343 -----DPLYYFGRICGANQP--------PQVLLMRPDIAEEFRAVRIKSYSASDKTRMLA 389
Query: 395 QE 396
+E
Sbjct: 390 KE 391
>AT3G26680.1 | chr3:9801309-9803517 FORWARD LENGTH=485
Length = 484
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 141/328 (42%), Gaps = 30/328 (9%)
Query: 4 ELPRGLPFAVDTWTAASAVK-RHRFLTHAHRDHIAGIT-ATNVAAVYASRLTILIACHIF 61
+LP G PF VD + FLTH H DH G+T A + +Y S LT +
Sbjct: 150 KLP-GTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRLSL 208
Query: 62 PQLDRADAFVEVELGAPVLVPDPDGDFTVTAFDANHCPGAVMFLFEGASFGRVLHTGDCR 121
+ +E+++ + VT +ANHCPGA + F LHTGD R
Sbjct: 209 SVNPSSIHPLELDVEYTI------NGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFR 262
Query: 122 LT------PDFRFLAADYVFLDCTFAACSLHFPSKDDSIRQVI----NCIWKHPNAPVVY 171
+ P ++LD T+ FPSK+D + V+ + + K P +V
Sbjct: 263 ASKQMQTHPLLFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIV- 321
Query: 172 LVSDMLGQEEILMEVSKVFGSKIYVDRDKNSECYHTLSL--VAPEILTDDSSSRFQVIGF 229
+ S +G+E + + ++K G KI+ + + + ++ + TD ++ V+
Sbjct: 322 VGSYSIGKECVYLAIAKALGVKIFANASRR-RILQSFGWDDISKNLSTDGKATCLHVLPM 380
Query: 230 PRLS-ERATEMLALARAKHQPEPLIIRASSQWYAYYEPPEGSTKRKPALTEPMRDEFGVW 288
L ER E L + R ++ L R + Y+ E + + R + ++
Sbjct: 381 SSLKVERLDEHLKIYREQYG-AVLAFRPTGWTYS-----EKIGEHLDLIKPTSRGKITIY 434
Query: 289 HVCFSMHSSREELEQALRFIQPKWVIST 316
V +S HSS EL + ++F++P +I T
Sbjct: 435 GVPYSEHSSFTELREFVQFLRPDKIIPT 462
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,760,043
Number of extensions: 629600
Number of successful extensions: 1685
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1666
Number of HSP's successfully gapped: 6
Length of query: 663
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 558
Effective length of database: 8,227,889
Effective search space: 4591162062
Effective search space used: 4591162062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)