Os01g0783400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0783400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.97 | 0.423 | 4.13 | 1.16 | 0.514 | -0.781 | -0.353 | 1.44 | 0.389 | 1.35 | 20.54 | 2094 | -- | -- |
| 85.37 | 0.43 | 4.17 | 0.987 | 0.525 | -0.968 | -0.143 | -- | 0.344 | 0.975 | 19.8 | 2667 | -- | -- |
| 81.47 | 0.42 | 4.13 | 1.15 | 0.516 | -0.78 | -- | 1.41 | 0.387 | 1.38 | 20.6 | 2080 | -- | -- |
| 84.32 | 0.428 | 4.18 | 0.939 | 0.517 | -1.08 | -- | -- | 0.315 | 1.27 | 19.59 | 2082 | -- | -- |
| 95.25 | 0.457 | 4.18 | 0.788 | -- | -0.592 | -- | 0.97 | 0.262 | -- | 20.5 | 1766 | -- | -- |
| 105.23 | 0.481 | 4.23 | 0.426 | 0.476 | -- | -0.224 | -- | 0.0899 | 1.53 | -- | -- | -- | -- |
| 105.43 | 0.481 | 4.23 | 0.433 | 0.476 | -- | -- | -- | 0.0911 | 1.54 | -- | -- | -- | -- |
| 98.97 | 0.465 | 4.2 | 0.659 | -- | -0.754 | -- | -- | 0.216 | -- | 19.59 | 2082 | -- | -- |
| 100.38 | 0.467 | 4.21 | -- | 0.512 | -0.611 | -- | -- | 0.157 | 1.57 | 20.5 | 1434 | -- | -- |
| 119.33 | 0.51 | 4.22 | 0.452 | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
| 110.38 | 0.491 | 4.24 | -- | 0.484 | -- | -- | -- | 0.0429 | 1.57 | -- | -- | -- | -- |
| 109.3 | 0.489 | 4.22 | -- | -- | -0.575 | -- | -- | 0.141 | -- | 20.29 | 1669 | -- | -- |
| 124.73 | 0.521 | 4.24 | -- | -- | -- | -- | -- | 0.0513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 2 | 77.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 7 | 78.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 11 | 78.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 12 | 78.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 19 | 78.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 23 | 78.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 53 | 79.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 63 | 79.23 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 65 | 79.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 74 | 79.32 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 153 | 80.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 154 | 80.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 162 | 80.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 172 | 80.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 203 | 80.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 229 | 80.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 253 | 80.71 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 263 | 80.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 268 | 80.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 353 | 81.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 405 | 81.36 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 420 | 81.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 425 | 81.42 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 495 | 81.56 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 515 | 81.61 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 528 | 81.64 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 550 | 81.71 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 581 | 81.79 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 589 | 81.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 597 | 81.81 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 613 | 81.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 628 | 81.88 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 633 | 81.89 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 637 | 81.90 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 656 | 81.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 689 | 81.97 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 714 | 82.01 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 747 | 82.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 763 | 82.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 764 | 82.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 767 | 82.07 | radiation | 10 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 785 | 82.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 853 | 82.20 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 854 | 82.20 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 869 | 82.21 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 876 | 82.22 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 890 | 82.24 | humidity | 90 | 14400 | > th | dose independent | sin | 14 | NA |
| 891 | 82.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 892 | 82.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 896 | 82.24 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 22 |
| 902 | 82.25 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 915 | 82.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 923 | 82.26 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 930 | 82.27 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 931 | 82.27 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 939 | 82.27 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 956 | 82.27 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 22 | 15 |
| 978 | 82.28 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 24 | 11 |