BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0783400 Os01g0783400|J065122J03
         (217 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27410.1  | chr1:9517226-9518743 FORWARD LENGTH=423            159   7e-40
AT3G26680.1  | chr3:9801309-9803517 FORWARD LENGTH=485             68   5e-12
AT2G45700.1  | chr2:18827216-18830505 REVERSE LENGTH=724           65   2e-11

>AT1G27410.1 | chr1:9517226-9518743 FORWARD LENGTH=423
          Length = 422

 Score =  159 bits (403), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 98/171 (57%), Gaps = 4/171 (2%)

Query: 30  MDEGLVSVDKFSGGSQAYFLTHLHQDHTRGLGAAGGWRHGPLYCSPVTARLLPTRFPGVD 89
           M+ GL+SVD++  GSQAYFLTH+H DHTRGL  +GGW  GPLYCS  TA L P+RFPG D
Sbjct: 1   MESGLISVDRWRNGSQAYFLTHIHSDHTRGL--SGGWSQGPLYCSRTTASLFPSRFPGFD 58

Query: 90  XXXXXXXXXXXXXXXXXXXXXXXXXVSVVVTAIPALHCPGSLMYLFRGDLGCMLYTGDFR 149
                                    V + + AI A HCPGS+M+LFRGD GC LYTGDFR
Sbjct: 59  LSLLRVVPLFSWTSLSLRSPSSGSTVRLHLMAIDAHHCPGSIMFLFRGDFGCFLYTGDFR 118

Query: 150 WEXXXXXXXXXXXXXXXXXXGDTVDVLYLDNTYCHPSLSFPPRPIVAEQVS 200
           W+                     VD+LYLDNTYC+P  SFP R +  + V+
Sbjct: 119 WDSDASDEARTTLVAAIDEF--PVDILYLDNTYCNPIYSFPSRLVAVQLVA 167



>AT3G26680.1 | chr3:9801309-9803517 FORWARD LENGTH=485
          Length = 484

 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 65/158 (41%), Gaps = 22/158 (13%)

Query: 43  GSQAYFLTHLHQDHTRGLGAAGGWRHGPLYCSPVTARLLPTRFPGVDXXXXXXXXXXXXX 102
           G  AYFLTH H DH  GL  A  W HGP+YCS +T+RLL                     
Sbjct: 168 GCSAYFLTHFHADHYIGLTKA--WSHGPIYCSSLTSRLLRL-----------SLSVNPSS 214

Query: 103 XXXXXXXXXXXXVSVVVTAIPALHCPGSLMYLFR-GDLGCMLYTGDFRWEXXXXXXXXXX 161
                         + VT I A HCPG+ +  FR  D  C L+TGDFR            
Sbjct: 215 IHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFR--------ASKQ 266

Query: 162 XXXXXXXXGDTVDVLYLDNTYCHPSLSFPPRPIVAEQV 199
                      V VLYLD TYC+P   FP +  V   V
Sbjct: 267 MQTHPLLFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYV 304



>AT2G45700.1 | chr2:18827216-18830505 REVERSE LENGTH=724
          Length = 723

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 67/154 (43%), Gaps = 24/154 (15%)

Query: 47  YFLTHLHQDHTRGLGAAGGWRHGPLYCSPVTARLLPTRFPGVDXXXXXXXXXXXXXXXXX 106
           +FLTH H DH +GL  +  + HG +YCS VTA+L+  +  G+                  
Sbjct: 418 WFLTHFHLDHYQGLTKS--FSHGKIYCSLVTAKLVNMKI-GIPWERLQVLDLGQKVNIS- 473

Query: 107 XXXXXXXXVSVVVTAIPALHCPGSLMYLFRGDLG-CMLYTGDFRWEXXXXXXXXXXXXXX 165
                     + VT   A HCPGS+M LF    G  +L+TGDFR+               
Sbjct: 474 ---------GIDVTCFDANHCPGSIMILFEPANGKAVLHTGDFRYSEEMSNWLI------ 518

Query: 166 XXXXGDTVDVLYLDNTYCHPSLSFPPRPIVAEQV 199
               G  +  L LD TYC+P   FP +  V + V
Sbjct: 519 ----GSHISSLILDTTYCNPQYDFPKQEAVIQFV 548



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.141    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,913,185
Number of extensions: 123117
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 4
Length of query: 217
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 123
Effective length of database: 8,529,465
Effective search space: 1049124195
Effective search space used: 1049124195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)