BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0424300 Os09g0424300|AK102445
(392 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0424300 S-adenosylmethionine decarboxylase 786 0.0
Os02g0611200 Similar to S-adenosylmethionine decarboxylase ... 545 e-155
Os04g0498600 S-adenosylmethionine decarboxylase proenzyme (... 528 e-150
Os05g0141800 183 2e-46
>Os09g0424300 S-adenosylmethionine decarboxylase
Length = 392
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MSMSLADSWGSAPASPIGFEGYEKRLEITLSDAPVFVDPCGRGLRALSREQIDSFLDLAK 60
MSMSLADSWGSAPASPIGFEGYEKRLEITLSDAPVFVDPCGRGLRALSREQIDSFLDLAK
Sbjct: 1 MSMSLADSWGSAPASPIGFEGYEKRLEITLSDAPVFVDPCGRGLRALSREQIDSFLDLAK 60
Query: 61 CTIVSHLSNKHFDSYVLSESSLFVYPHKVVLKTCGTTKLLLSIPRILELAAELSLPVLSV 120
CTIVSHLSNKHFDSYVLSESSLFVYPHKVVLKTCGTTKLLLSIPRILELAAELSLPVLSV
Sbjct: 61 CTIVSHLSNKHFDSYVLSESSLFVYPHKVVLKTCGTTKLLLSIPRILELAAELSLPVLSV 120
Query: 121 KYSRGMFIFPGAQPSPHRSFLEEVSVLNSFFGGLKSGGNAYVIGDAFKPKKKWHVYYATE 180
KYSRGMFIFPGAQPSPHRSFLEEVSVLNSFFGGLKSGGNAYVIGDAFKPKKKWHVYYATE
Sbjct: 121 KYSRGMFIFPGAQPSPHRSFLEEVSVLNSFFGGLKSGGNAYVIGDAFKPKKKWHVYYATE 180
Query: 181 EPEQPMVTLEMCMTGLDAKKAEVFFKDSTDGSCSSAKEMTMFSGISEIIPEMEICDFEFD 240
EPEQPMVTLEMCMTGLDAKKAEVFFKDSTDGSCSSAKEMTMFSGISEIIPEMEICDFEFD
Sbjct: 181 EPEQPMVTLEMCMTGLDAKKAEVFFKDSTDGSCSSAKEMTMFSGISEIIPEMEICDFEFD 240
Query: 241 PCGYSMNGIYGPAVSTIHVTPEEGFSYASYEAMNFNPSSLVYDDLIKKVLACFCPSDFSV 300
PCGYSMNGIYGPAVSTIHVTPEEGFSYASYEAMNFNPSSLVYDDLIKKVLACFCPSDFSV
Sbjct: 241 PCGYSMNGIYGPAVSTIHVTPEEGFSYASYEAMNFNPSSLVYDDLIKKVLACFCPSDFSV 300
Query: 301 AVTIFGGHGFAKSWAKGAEVDSYMCDDLVEQELPGGGVLMYQSFTAVTPGAVSPRSTLDG 360
AVTIFGGHGFAKSWAKGAEVDSYMCDDLVEQELPGGGVLMYQSFTAVTPGAVSPRSTLDG
Sbjct: 301 AVTIFGGHGFAKSWAKGAEVDSYMCDDLVEQELPGGGVLMYQSFTAVTPGAVSPRSTLDG 360
Query: 361 WNSDGAEMVAKSKEMSVCWEGE 382
WNSDGAEMVAKSKEMSVCWEGE
Sbjct: 361 WNSDGAEMVAKSKEMSVCWEGE 382
>Os02g0611200 Similar to S-adenosylmethionine decarboxylase proenzyme (EC
4.1.1.50) (AdoMetDC) (SamDC) (Induced stolen tip protein
TUB13) [Contains: S- adenosylmethionine decarboxylase
alpha chain
Length = 395
Score = 545 bits (1404), Expect = e-155, Method: Compositional matrix adjust.
Identities = 268/379 (70%), Positives = 309/379 (81%), Gaps = 6/379 (1%)
Query: 3 MSLADSWGSAPASPIGFEGYEKRLEITLSDAPVFVDPCGRGLRALSREQIDSFLDLAKCT 62
+S+ADS P S IGFEGYEKRLEIT S+APVF DP GRGLRALSR QIDS LDLA+CT
Sbjct: 4 LSVADS---PPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARCT 60
Query: 63 IVSHLSNKHFDSYVLSESSLFVYPHKVVLKTCGTTKLLLSIPRILELAAELSLPVLSVKY 122
IVS LSN+ FDSYVLSESSLFVYP+K+V+KTCGTTKLLL+IPRILELA ELSLP+ +VKY
Sbjct: 61 IVSELSNEVFDSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRILELAEELSLPLEAVKY 120
Query: 123 SRGMFIFPGAQPSPHRSFLEEVSVLNSFFGGLKSGGNAYVIGDAFKPKKKWHVYYATEEP 182
SRG FIFP AQPSPH++F EEV+VLN +FGGLKSGGNAYVIGD KP +KWHVYYAT+ P
Sbjct: 121 SRGTFIFPEAQPSPHKNFSEEVAVLNRYFGGLKSGGNAYVIGDPAKPGQKWHVYYATQHP 180
Query: 183 EQPMVTLEMCMTGLDAKKAEVFFKDSTDGSCSSAKEMTMFSGISEIIPEMEICDFEFDPC 242
EQP+VTLEMCMTGLD KKA VFFK S DG + AKEMT SGIS+IIPEME+CDF+F+PC
Sbjct: 181 EQPVVTLEMCMTGLDKKKASVFFKTSADGHTTYAKEMTKLSGISDIIPEMEVCDFDFEPC 240
Query: 243 GYSMNGIYGPAVSTIHVTPEEGFSYASYEAMNFNPSSLVYDDLIKKVLACFCPSDFSVAV 302
GYSMN I+GPA STIHVTPE+GFSYASYE M FNP+SL Y DL+K+VL CF P +FSVAV
Sbjct: 241 GYSMNAIHGPAFSTIHVTPEDGFSYASYEVMGFNPASLAYGDLVKRVLRCFGPLEFSVAV 300
Query: 303 TIFGGHGFAKSWAKGAEVDSYMCDDLVEQELPGGGVLMYQSFTAVTPGAV-SPRSTLDGW 361
TIFGG A +WAKG +V +Y C ++VEQELP GG+L+YQSFTA A SPRS L +
Sbjct: 301 TIFGGRNHAGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSFTATAEIATGSPRSVLHCF 360
Query: 362 NSDGAEMVAKSKEMSVCWE 380
+ E K + ++ WE
Sbjct: 361 ADENTEKAGKME--ALYWE 377
>Os04g0498600 S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)
(AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
decarboxylase alpha chain
Length = 398
Score = 528 bits (1359), Expect = e-150, Method: Compositional matrix adjust.
Identities = 260/365 (71%), Positives = 298/365 (81%), Gaps = 3/365 (0%)
Query: 13 PASPIGFEGYEKRLEITLSDAPVFVDPCGRGLRALSREQIDSFLDLAKCTIVSHLSNKHF 72
P S IGFEGYEKRLEIT S+APVF DP GRGLRALSR QIDS LDLA+CTIVS LSNK F
Sbjct: 11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDF 70
Query: 73 DSYVLSESSLFVYPHKVVLKTCGTTKLLLSIPRILELAAELSLPVLSVKYSRGMFIFPGA 132
DSYVLSESSLF+Y K+V+KTCGTTKLLL+IPRILELA LS+P+ +VKYSRGMFIFP A
Sbjct: 71 DSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFIFPSA 130
Query: 133 QPSPHRSFLEEVSVLNSFFGGLKSGGNAYVIGDAFKPKKKWHVYYATEEPEQPMVTLEMC 192
QP+PHRSF EEV+VLN +FG LKSGGNAYVIGD KP +KWH+YYAT+ PEQPMVTLEMC
Sbjct: 131 QPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHPEQPMVTLEMC 190
Query: 193 MTGLDAKKAEVFFKDSTDGSCSSAKEMTMFSGISEIIPEMEICDFEFDPCGYSMNGIYGP 252
MTGLD +KA VFFK S DG S AKEMT SGIS+IIPEMEICDF+F+PCGYSMN I+G
Sbjct: 191 MTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGS 250
Query: 253 AVSTIHVTPEEGFSYASYEAMNFNPSSLVYDDLIKKVLACFCPSDFSVAVTIFGGHGFAK 312
A STIHVTPE+GFSYASYE + F+ S+L Y DL+K+VL CF PS+FSVAVTIFGGHG A
Sbjct: 251 AFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAVTIFGGHGHAG 310
Query: 313 SWAKGAEVDSYMCDDLVEQELPGGGVLMYQSFTAV--TPGAV-SPRSTLDGWNSDGAEMV 369
+WAK D+Y C+++VEQELP GG+L+YQSF A P AV SP+S L + ++
Sbjct: 311 TWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNP 370
Query: 370 AKSKE 374
A KE
Sbjct: 371 APVKE 375
>Os05g0141800
Length = 359
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 178/348 (51%), Gaps = 21/348 (6%)
Query: 18 GFEGYEKRLEITLSDAPVFVDPCGRGLRALSREQIDSFLDLAKCTIVSHLSNKHFDSYVL 77
GFEG+EKRLE+ + GLR L E + LD A+C +VS N D+YVL
Sbjct: 5 GFEGFEKRLELVFELPASGGEVARHGLRLLPAEALREVLDAAQCAVVSAAGNAAADAYVL 64
Query: 78 SESSLFVYPHKVVLKTCGTTKLLLSIPRILELAAELSLPVLSVKYSRGMFIFPGAQPSPH 137
SESS+FVYP +VVLKTCGTT LL ++P +L AA L L + S +YSRG ++FP AQP PH
Sbjct: 65 SESSMFVYPGRVVLKTCGTTPLLRAVPVLLRAAAALRLRLRSCRYSRGEYLFPEAQPFPH 124
Query: 138 RSFLEEVSVLNS-----FFGGLKSGGNAYVIGDAFKPKKKWHVY------YATEEPEQPM 186
F +EV+ L++ +S + +WHVY +++
Sbjct: 125 AHFADEVAYLDAALPRELLRFRRSAVMPSSSSSSPGASHRWHVYSASSSASSSDADGAAR 184
Query: 187 VTLEMCMTGLDAKKAEVFFKDSTDGSCSSA--KEMTMFSGISEII----PEMEICDFEFD 240
+T E+CMT LD A F++ DG S A EMT SGI ++ P +C + F
Sbjct: 185 LTAEVCMTELDRGMAARFYQRPGDGRTSHAIGDEMTAASGIGGVVDENDPRSLVCAYAFA 244
Query: 241 PCGYSMNGIYGPAVSTIHVTPEEGFSYASYEAMNFNPSSLVYDDLIKKVLACFCPSDFSV 300
PCGYSMN + G +T+HVTPE+G YAS+E + ++ + F P+ SV
Sbjct: 245 PCGYSMNALDGARYATVHVTPEDGHCYASFECATDDAAAALAAIRRAVAA--FRPATVSV 302
Query: 301 AV--TIFGGHGFAKSWAKGAEVDSYMCDDLVEQELPGGGVLMYQSFTA 346
++ T A+ E C + PG G + YQ+FTA
Sbjct: 303 SISHTSSAASSLCTPVAEALEPLGLACHCRAAEVFPGAGTVTYQTFTA 350
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,864,424
Number of extensions: 590508
Number of successful extensions: 1246
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1242
Number of HSP's successfully gapped: 4
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)