Os09g0424300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : S-adenosylmethionine decarboxylase.
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Os09g0424300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : S-adenosylmethionine decarboxylase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.52 | 0.549 | 8.45 | -0.308 | 1.44 | 1.7 | 1.41 | 1.39 | -0.24 | 15.8 | 25.2 | 328 | -- | -- |
| 138.48 | 0.548 | 8.42 | -0.0659 | 1.45 | 1.61 | 1.12 | -- | -0.175 | 15.8 | 25.6 | 341 | -- | -- |
| 141.66 | 0.554 | 8.44 | -0.194 | 1.4 | 1.63 | -- | 0.757 | -0.211 | 15.8 | 25.24 | 351 | -- | -- |
| 142.1 | 0.555 | 8.42 | -0.0629 | 1.44 | 1.58 | -- | -- | -0.18 | 15.8 | 25.4 | 348 | -- | -- |
| 212.08 | 0.678 | 8.43 | -0.184 | -- | 1.84 | -- | 1.21 | -0.206 | -- | 26.13 | 1125 | -- | -- |
| 175.18 | 0.62 | 8.49 | -0.487 | 1.22 | -- | 1.07 | -- | -0.517 | 15.6 | -- | -- | -- | -- |
| 178.66 | 0.626 | 8.49 | -0.469 | 1.22 | -- | -- | -- | -0.511 | 15.5 | -- | -- | -- | -- |
| 214.02 | 0.681 | 8.4 | -0.0105 | -- | 1.78 | -- | -- | -0.149 | -- | 26.4 | 1141 | -- | -- |
| 142.18 | 0.555 | 8.41 | -- | 1.44 | 1.61 | -- | -- | -0.17 | 15.8 | 25.4 | 345 | -- | -- |
| 261.92 | 0.756 | 8.48 | -0.52 | -- | -- | -- | -- | -0.544 | -- | -- | -- | -- | -- |
| 184.45 | 0.635 | 8.47 | -- | 1.23 | -- | -- | -- | -0.459 | 15.5 | -- | -- | -- | -- |
| 213.97 | 0.681 | 8.4 | -- | -- | 1.78 | -- | -- | -0.144 | -- | 26.4 | 1130 | -- | -- |
| 269.05 | 0.766 | 8.47 | -- | -- | -- | -- | -- | -0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.62 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 5 | 136.45 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 16 | 137.16 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 19 | 137.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 26 | 137.64 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 27 | 137.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 17 |
| 34 | 137.79 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 57 | 138.32 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 79 | 138.75 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 89 | 138.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 164 | 140.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 179 | 140.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 369 | 142.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 371 | 142.85 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 423 | 143.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 485 | 143.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 518 | 143.28 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 567 | 143.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 596 | 143.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 601 | 143.51 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 633 | 143.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 644 | 143.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 666 | 143.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 736 | 143.99 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |