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Os02g0611200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) (Induced stolen tip protein TUB13) [Contains: S- adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.78 | 0.378 | 14.8 | 0.12 | 1.02 | -1.31 | 0.0324 | -0.259 | -0.012 | 7.22 | 21.07 | 785 | -- | -- |
| 64.78 | 0.375 | 14.8 | 0.172 | 1.01 | -1.32 | 0.113 | -- | -0.00218 | 7.23 | 21.38 | 785 | -- | -- |
| 64.77 | 0.375 | 14.8 | 0.131 | 1.02 | -1.31 | -- | -0.2 | -0.0121 | 7.21 | 21.33 | 789 | -- | -- |
| 64.8 | 0.375 | 14.8 | 0.174 | 1.01 | -1.33 | -- | -- | 0.00057 | 7.21 | 21.4 | 785 | -- | -- |
| 94.15 | 0.452 | 14.8 | 0.718 | -- | -2.19 | -- | 2.5 | 0.151 | -- | 23.66 | 622 | -- | -- |
| 103.25 | 0.476 | 14.9 | -0.191 | 1.4 | -- | 0.421 | -- | -0.237 | 7.7 | -- | -- | -- | -- |
| 103.75 | 0.477 | 14.9 | -0.181 | 1.4 | -- | -- | -- | -0.238 | 7.68 | -- | -- | -- | -- |
| 96.23 | 0.457 | 14.9 | 0.282 | -- | -2 | -- | -- | 0.0643 | -- | 23.04 | 611 | -- | -- |
| 65.54 | 0.377 | 14.8 | -- | 1.02 | -1.28 | -- | -- | -0.0302 | 7.23 | 21.62 | 783 | -- | -- |
| 208.82 | 0.675 | 14.9 | -0.163 | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
| 104.62 | 0.478 | 14.9 | -- | 1.4 | -- | -- | -- | -0.218 | 7.69 | -- | -- | -- | -- |
| 98.15 | 0.461 | 14.9 | -- | -- | -1.94 | -- | -- | 0.00409 | -- | 23.44 | 611 | -- | -- |
| 209.51 | 0.676 | 14.9 | -- | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 6 | 63.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 10 | 63.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 17 | 64.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 20 | 64.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 28 | 64.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 22 |
| 63 | 64.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 81 | 65.10 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 283 | 65.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 17 |
| 289 | 65.65 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 301 | 65.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 325 | 65.74 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 349 | 65.82 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 379 | 65.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 380 | 65.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 13 |
| 403 | 65.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 404 | 65.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 415 | 65.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 416 | 66.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 459 | 66.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 559 | 66.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 783 | 66.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 936 | 66.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
