BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0611200 Os02g0611200|AK070259
(395 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0611200 Similar to S-adenosylmethionine decarboxylase ... 789 0.0
Os04g0498600 S-adenosylmethionine decarboxylase proenzyme (... 639 0.0
Os09g0424300 S-adenosylmethionine decarboxylase 525 e-149
Os05g0141800 202 4e-52
>Os02g0611200 Similar to S-adenosylmethionine decarboxylase proenzyme (EC
4.1.1.50) (AdoMetDC) (SamDC) (Induced stolen tip protein
TUB13) [Contains: S- adenosylmethionine decarboxylase
alpha chain
Length = 395
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/395 (96%), Positives = 382/395 (96%)
Query: 1 MAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARCT 60
MAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARCT
Sbjct: 1 MAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARCT 60
Query: 61 IVSELSNEVFDSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRIXXXXXXXXXXXXXVKY 120
IVSELSNEVFDSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRI VKY
Sbjct: 61 IVSELSNEVFDSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRILELAEELSLPLEAVKY 120
Query: 121 SRGTFIFPEAQPSPHKNFSEEVAVLNRYFGGLKSGGNAYVIGDPAKPGQKWHVYYATQHP 180
SRGTFIFPEAQPSPHKNFSEEVAVLNRYFGGLKSGGNAYVIGDPAKPGQKWHVYYATQHP
Sbjct: 121 SRGTFIFPEAQPSPHKNFSEEVAVLNRYFGGLKSGGNAYVIGDPAKPGQKWHVYYATQHP 180
Query: 181 EQPVVTLEMCMTGLDKKKASVFFKTSADGHTTYAKEMTKLSGISDIIPEMEVCDFDFEPC 240
EQPVVTLEMCMTGLDKKKASVFFKTSADGHTTYAKEMTKLSGISDIIPEMEVCDFDFEPC
Sbjct: 181 EQPVVTLEMCMTGLDKKKASVFFKTSADGHTTYAKEMTKLSGISDIIPEMEVCDFDFEPC 240
Query: 241 GYSMNAIHGPAFSTIHVTPEDGFSYASYEVMGFNPASLAYGDLVKRVLRCFGPLEFSVAV 300
GYSMNAIHGPAFSTIHVTPEDGFSYASYEVMGFNPASLAYGDLVKRVLRCFGPLEFSVAV
Sbjct: 241 GYSMNAIHGPAFSTIHVTPEDGFSYASYEVMGFNPASLAYGDLVKRVLRCFGPLEFSVAV 300
Query: 301 TIFGGRNHAGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSFTATAEIATGSPRSVLHCF 360
TIFGGRNHAGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSFTATAEIATGSPRSVLHCF
Sbjct: 301 TIFGGRNHAGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSFTATAEIATGSPRSVLHCF 360
Query: 361 ADENTEKAGKMEALYWEDDAVEEIDGTEGKKMRSC 395
ADENTEKAGKMEALYWEDDAVEEIDGTEGKKMRSC
Sbjct: 361 ADENTEKAGKMEALYWEDDAVEEIDGTEGKKMRSC 395
>Os04g0498600 S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)
(AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
decarboxylase alpha chain
Length = 398
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/395 (80%), Positives = 339/395 (85%), Gaps = 8/395 (2%)
Query: 1 MAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARCT 60
M VLS AD PPVSAIGFEGYEKRLEITFSEAPVFADP+GRGLRALSRAQIDSVLDLARCT
Sbjct: 1 MGVLSAADPPPVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCT 60
Query: 61 IVSELSNEVFDSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRIXXXXXXXXXXXXXVKY 120
IVSELSN+ FDSYVLSESSLF+Y KIVIKTCGTTKLLL IPRI VKY
Sbjct: 61 IVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKY 120
Query: 121 SRGTFIFPEAQPSPHKNFSEEVAVLNRYFGGLKSGGNAYVIGDPAKPGQKWHVYYATQHP 180
SRG FIFP AQP+PH++FSEEVAVLNRYFG LKSGGNAYVIGDPAKPGQKWH+YYATQHP
Sbjct: 121 SRGMFIFPSAQPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHP 180
Query: 181 EQPVVTLEMCMTGLDKKKASVFFKTSADGHTTYAKEMTKLSGISDIIPEMEVCDFDFEPC 240
EQP+VTLEMCMTGLDK+KASVFFKTSADGHT+ AKEMTKLSGISDIIPEME+CDFDFEPC
Sbjct: 181 EQPMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPC 240
Query: 241 GYSMNAIHGPAFSTIHVTPEDGFSYASYEVMGFNPASLAYGDLVKRVLRCFGPLEFSVAV 300
GYSMNAIHG AFSTIHVTPEDGFSYASYEV+GF+ ++LAYGDLVKRVLRCFGP EFSVAV
Sbjct: 241 GYSMNAIHGSAFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAV 300
Query: 301 TIFGGRNHAGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSFTATAE--IATGSPRSVLH 358
TIFGG HAGTWAK L+ AY C+NMVEQELP GGLLIYQSF AT + +A GSP+SVLH
Sbjct: 301 TIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLH 360
Query: 359 CFADENT-----EKAGKMEALY-WEDDAVEEIDGT 387
CF EN K GK+ L W +DA+EE DG
Sbjct: 361 CFEAENMVNPAPVKEGKLGNLLPWGEDALEENDGV 395
>Os09g0424300 S-adenosylmethionine decarboxylase
Length = 392
Score = 525 bits (1351), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/379 (68%), Positives = 298/379 (78%), Gaps = 6/379 (1%)
Query: 4 LSVADS---PPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARCT 60
+S+ADS P S IGFEGYEKRLEIT S+APVF DP GRGLRALSR QIDS LDLA+CT
Sbjct: 3 MSLADSWGSAPASPIGFEGYEKRLEITLSDAPVFVDPCGRGLRALSREQIDSFLDLAKCT 62
Query: 61 IVSELSNEVFDSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRIXXXXXXXXXXXXXVKY 120
IVS LSN+ FDSYVLSESSLFVYP+K+V+KTCGTTKLLL+IPRI VKY
Sbjct: 63 IVSHLSNKHFDSYVLSESSLFVYPHKVVLKTCGTTKLLLSIPRILELAAELSLPVLSVKY 122
Query: 121 SRGTFIFPEAQPSPHKNFSEEVAVLNRYFGGLKSGGNAYVIGDPAKPGQKWHVYYATQHP 180
SRG FIFP AQPSPH++F EEV+VLN +FGGLKSGGNAYVIGD KP +KWHVYYAT+ P
Sbjct: 123 SRGMFIFPGAQPSPHRSFLEEVSVLNSFFGGLKSGGNAYVIGDAFKPKKKWHVYYATEEP 182
Query: 181 EQPVVTLEMCMTGLDKKKASVFFKTSADGHTTYAKEMTKLSGISDIIPEMEVCDFDFEPC 240
EQP+VTLEMCMTGLD KKA VFFK S DG + AKEMT SGIS+IIPEME+CDF+F+PC
Sbjct: 183 EQPMVTLEMCMTGLDAKKAEVFFKDSTDGSCSSAKEMTMFSGISEIIPEMEICDFEFDPC 242
Query: 241 GYSMNAIHGPAFSTIHVTPEDGFSYASYEVMGFNPASLAYGDLVKRVLRCFGPLEFSVAV 300
GYSMN I+GPA STIHVTPE+GFSYASYE M FNP+SL Y DL+K+VL CF P +FSVAV
Sbjct: 243 GYSMNGIYGPAVSTIHVTPEEGFSYASYEAMNFNPSSLVYDDLIKKVLACFCPSDFSVAV 302
Query: 301 TIFGGRNHAGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSFTATAEIATGSPRSVLHCF 360
TIFGG A +WAKG +V +Y C ++VEQELP GG+L+YQSFTA A SPRS L +
Sbjct: 303 TIFGGHGFAKSWAKGAEVDSYMCDDLVEQELPGGGVLMYQSFTAVTPGAV-SPRSTLDGW 361
Query: 361 ADENTEKAGKME--ALYWE 377
+ E K + ++ WE
Sbjct: 362 NSDGAEMVAKSKEMSVCWE 380
>Os05g0141800
Length = 359
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 190/355 (53%), Gaps = 23/355 (6%)
Query: 12 VSAIGFEGYEKRLEITFSEAPVFADPNGR-GLRALSRAQIDSVLDLARCTIVSELSNEVF 70
+++ GFEG+EKRLE+ F E P R GLR L + VLD A+C +VS N
Sbjct: 1 MASCGFEGFEKRLELVF-ELPASGGEVARHGLRLLPAEALREVLDAAQCAVVSAAGNAAA 59
Query: 71 DSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRIXXXXXXXXXXXXXVKYSRGTFIFPEA 130
D+YVLSESS+FVYP ++V+KTCGTT LL A+P + +YSRG ++FPEA
Sbjct: 60 DAYVLSESSMFVYPGRVVLKTCGTTPLLRAVPVLLRAAAALRLRLRSCRYSRGEYLFPEA 119
Query: 131 QPSPHKNFSEEVAVLNRYFGG--LKSGGNAYV-IGDPAKPG--QKWHVYYATQHPEQPV- 184
QP PH +F++EVA L+ L+ +A + + PG +WHVY A+
Sbjct: 120 QPFPHAHFADEVAYLDAALPRELLRFRRSAVMPSSSSSSPGASHRWHVYSASSSASSSDA 179
Query: 185 -----VTLEMCMTGLDKKKASVFFKTSADGHTTYA--KEMTKLSGISDII----PEMEVC 233
+T E+CMT LD+ A+ F++ DG T++A EMT SGI ++ P VC
Sbjct: 180 DGAARLTAEVCMTELDRGMAARFYQRPGDGRTSHAIGDEMTAASGIGGVVDENDPRSLVC 239
Query: 234 DFDFEPCGYSMNAIHGPAFSTIHVTPEDGFSYASYEVMGFNPASLAYGDLVKRVLRCFGP 293
+ F PCGYSMNA+ G ++T+HVTPEDG YAS+E + A+ F P
Sbjct: 240 AYAFAPCGYSMNALDGARYATVHVTPEDGHCYASFECATDDAAAALAAIRRAVAA--FRP 297
Query: 294 LEFSVAV--TIFGGRNHAGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSFTATA 346
SV++ T + A+ L+ +C + P G + YQ+FTA A
Sbjct: 298 ATVSVSISHTSSAASSLCTPVAEALEPLGLACHCRAAEVFPGAGTVTYQTFTAPA 352
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,644,189
Number of extensions: 570120
Number of successful extensions: 1154
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 4
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)